diff options
Diffstat (limited to 'scripts/crossvalidation.rb')
-rwxr-xr-x | scripts/crossvalidation.rb | 6 |
1 files changed, 1 insertions, 5 deletions
diff --git a/scripts/crossvalidation.rb b/scripts/crossvalidation.rb index 32b9950..e02c5ca 100755 --- a/scripts/crossvalidation.rb +++ b/scripts/crossvalidation.rb @@ -5,13 +5,11 @@ require 'yaml' name = File.basename ARGV[0], ".csv" file = File.join "data",ARGV[0] dataset = Dataset.from_csv_file file -#model = Model::LazarRegression.create(training_dataset: dataset)#, :prediction_algorithm => "OpenTox::Algorithm::Regression.local_fingerprint_regression") -model = Model::LazarRegression.create(training_dataset: dataset, algorithms: { :similarity => { :min => 0.5 }}) +model = Model::LazarRegression.create(training_dataset: dataset, algorithms: { :prediction => {:method => "Algorithm::Caret.rf"}, :similarity => { :min => 0.5 }}) csv_file = File.join("data",ARGV[0].sub(/.csv/,"-cv-#{ARGV[1]}.csv")) id_file = File.join("data",ARGV[0].sub(/.csv/,"-cv-#{ARGV[1]}.id")) cv = Validation::RegressionCrossValidation.create model File.open(id_file,"w+"){|f| f.puts cv.id} -#cv = Validation::RegressionCrossValidation.first p cv.id data = [] cv.predictions.each do |cid,p| @@ -29,5 +27,3 @@ CSV.open(csv_file,"w+") do |csv| csv << ["SMILES","LOAEL_measured_median","LOAEL_predicted","Prediction_interval_low","Prediction_interval_high"] data.each{|r| csv << r} end -=begin -=end |