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Diffstat (limited to 'scripts/mazzatorta-unique-smiles.rb')
-rwxr-xr-x | scripts/mazzatorta-unique-smiles.rb | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/scripts/mazzatorta-unique-smiles.rb b/scripts/mazzatorta-unique-smiles.rb new file mode 100755 index 0000000..0b6db2a --- /dev/null +++ b/scripts/mazzatorta-unique-smiles.rb @@ -0,0 +1,17 @@ +#!/usr/bin/env ruby +require_relative '../../lazar/lib/lazar' +include OpenTox + +csv_in = CSV.read(ARGV[0], :encoding => 'windows-1251:utf-8') +head = csv_in.shift +data = [] +data = [] +csv_in.each do |line| + c = Compound.from_smiles line[0] + # round to 5 significant digits in order to detect duplicates + mmol = line[1].to_f.signif(5) + data << [c.smiles,mmol,"mazzatorta"] #if c +end +data.sort!{|a,b| a[1] <=> b[1]} +puts ["SMILES","LOAEL","Dataset"].join "," +puts data.collect{|row| row.join ","}.join "\n" |