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| author | Christoph Helma <helma@in-silico.de> | 2010-03-19 16:24:42 +0100 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.de> | 2010-03-19 16:24:42 +0100 |
| commit | 3c847e5555ac0af41e62f11e6c92d915d8618794 (patch) | |
| tree | bf09b84cc4b4cf950f1b46c89d33f0df54556cae /lazar.rb | |
| parent | a3bfe1c366951828ccce6823a68b7f379979a8bf (diff) | |
owl parsing implemented
Diffstat (limited to 'lazar.rb')
| -rw-r--r-- | lazar.rb | 8 |
1 files changed, 4 insertions, 4 deletions
@@ -38,7 +38,7 @@ class Lazar < Model end if (classification != nil) - feature_uri = lazar.dependent_variable + "_lazar_classification" + feature_uri = lazar.dependent_variables + "_lazar_classification" prediction.compounds << compound_uri prediction.features << feature_uri prediction.data[compound_uri] = [] unless prediction.data[compound_uri] @@ -59,7 +59,7 @@ class Lazar < Model db_activities = lazar.activities[compound_uri] if db_activities prediction.source = lazar.activity_dataset_uri - feature_uri = lazar.dependent_variable + feature_uri = lazar.dependent_variables prediction.compounds << compound_uri prediction.features << feature_uri prediction.data[compound_uri] = [] unless prediction.data[compound_uri] @@ -76,7 +76,7 @@ class Lazar < Model data = YAML.load(yaml) activity_dataset = YAML.load(RestClient.get(data.activity_dataset_uri, :accept => 'application/x-yaml').to_s) feature_dataset = YAML.load(RestClient.get(data.feature_dataset_uri, :accept => 'application/x-yaml').to_s) - owl = OpenTox::Owl.new 'Model', uri + owl = OpenTox::Owl.create 'Model', uri owl.source = "http://github.com/helma/opentox-model" owl.title = "#{URI.decode(activity_dataset.title)} lazar classification" owl.date = created_at.to_s @@ -161,7 +161,7 @@ post '/:id/?' do # create prediction prediction = OpenTox::Dataset.new prediction.source = lazar.uri - prediction.title = URI.decode YAML.load(lazar.yaml).dependent_variable.split(/#/).last + prediction.title = URI.decode YAML.load(lazar.yaml).dependent_variables.split(/#/).last if compound_uri lazar.classify(compound_uri,prediction) unless lazar.database_activity?(compound_uri,prediction) |