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['rubygems', 'sinatra', 'redis', 'builder', 'opentox-ruby-api-wrapper'].each do |lib|
require lib
end
load File.join(File.dirname(__FILE__), 'model.rb')
case ENV['RACK_ENV']
when 'production'
@@redis = Redis.new :db => 0
when 'development'
@@redis = Redis.new :db => 1
when 'test'
@@redis = Redis.new :db => 2
@@redis.flush_db
end
set :default_content, :yaml
helpers do
def find
uri = uri(params[:splat].first)
halt 404, "Dataset \"#{uri}\" not found." unless @model = Model.find(uri)
end
def uri(name)
uri = url_for("/model/", :full) + URI.encode(name)
end
end
get '/algorithms' do
url_for("/algorithm/classification", :full)
end
post '/algorithm/classification/?' do # create a model
#halt 403,
activity_dataset_uri = OpenTox::Dataset.find(:uri => params[:dataset_uri]).uri
feature_dataset_uri = OpenTox::Algorithm::Fminer.create(activity_dataset_uri)
Model.create(:activity_dataset_uri => activity_dataset_uri, :feature_dataset_uri => feature_dataset_uri).uri
end
get '/models/?' do # get index of models
Model.find_all.join("\n")
end
get '/model/*/?' do
#halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
find
@model.to_yaml
end
delete '/model/*' do
name = params[:splat].first
halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
@model.destroy
"Model #{params[:id]} succesfully deleted."
end
post '/model/*' do # create prediction
name = params[:splat].first
halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
compound = OpenTox::Compound.new :uri => params[:compound_uri]
@model.predict(compound)
end
# PREDICTIONS
get '/model/*/predictions?' do # get dataset URI
name = params[:splat].first
halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
# Dataset.find
end
get '/model/*/prediction/*' do # display prediction for a compound
name = params[:splat].first
compound_uri = params[:splat][1]
halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
# prediction not found
#prediction.to_yaml
#xml prediction
end
get '/model/*/prediction/*/neighbors' do
name = params[:splat].first
compound_uri = params[:splat][1]
halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
# prediction not found
# prediction.neighbors
end
get '/model/*/prediction/*/features' do
name = params[:splat].first
compound_uri = params[:splat][1]
halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
# prediction not found
# prediction not found
# prediction.features
end
delete '/model/*/prediction/*' do # display prediction for a compound
name = params[:splat].first
halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
# Prediction.destroy
end
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