diff options
| author | Christoph Helma <helma@in-silico.ch> | 2021-02-18 21:59:37 +0100 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2021-02-18 21:59:37 +0100 |
| commit | 3af0c3d5c5b7f7d506a4582bbe3dca7d22bbefcc (patch) | |
| tree | 66a0f989c01fdac9085e9d22961fae2de0b568f7 /Makefile | |
| parent | 9901f99e546619121a5dc9f31e82865198e7b912 (diff) | |
further cleanup, detailled pa-predictions separated, text modified until results
Diffstat (limited to 'Makefile')
| -rw-r--r-- | Makefile | 25 |
1 files changed, 14 insertions, 11 deletions
@@ -112,20 +112,23 @@ PA_FIGURES = $(addprefix figures/, \ FIGURES = figures/roc.png figures/tsne-mp2d.png figures/tsne-cdk.png $(PA_FIGURES) -SUMMARY = summary.yaml +DATA = data.yaml -all: mutagenicity.pdf +all: mutagenicity.pdf $(PA_DIR)pa-predictions.pdf include $(PANDOC_SCHOLAR_PATH)/Makefile -mutagenicity.mustache.md: $(SUMMARY) mutagenicity.md $(TABLES) $(FIGURES) +mutagenicity.mustache.md: $(DATA) mutagenicity.md $(TABLES) $(FIGURES) mustache $^ > $@ +$(PA_DIR)pa-predictions.pdf: $(PA_DIR)pa-predictions.tex + pdflatex -output-directory $(PA_DIR) $(PA_DIR)pa-predictions.tex + # figures figures/tsne-cdk.png: figures/tsne-cdk.csv Rscript scripts/tsne-cdk.R -figures/tsne-cdk.csv: mutagenicity/cdk/mutagenicity-mod-2.new.csv pyrrolizidine-alkaloids/PA-Padel-2D_m2.csv +figures/tsne-cdk.csv: mutagenicity/cdk/mutagenicity-mod-2.new.csv pyrrolizidine-alkaloids/cdk/PA-Padel-2D_m2.csv scripts/cdk-descriptors.rb $^ > $@ figures/tsne-mp2d.png: figures/tsne-mp2d.csv @@ -140,7 +143,7 @@ figures/roc.png: figures/roc.csv figures/roc.csv: $(CV_SUMMARY) scripts/summary2roc.rb $< > $@ -$(PA_FIGURES): tables/pa-table.csv +$(PA_FIGURES): $(PA_DIR)pa-predictions.csv scripts/pa-groups.R # tables @@ -148,10 +151,10 @@ $(PA_FIGURES): tables/pa-table.csv tables/pa-summary.csv: $(PA_SUMMARY) scripts/pa-summary-table.rb $< > $@ -tables/pa-tab.tex: tables/pa-table.csv - scripts/pa-tex-table.rb $< > $@ +$(PA_DIR)pa-predictions.tex: $(PA_DIR)pa-predictions.csv + scripts/pa-predictions-latex.rb $< > $@ -tables/pa-table.csv: $(PA_PREDICTIONS) +$(PA_DIR)a-predictions.csv: $(PA_PREDICTIONS) scripts/pa-table.rb > $@ tables/lazar-summary.csv: $(CV_SUMMARY) @@ -160,12 +163,12 @@ tables/lazar-summary.csv: $(CV_SUMMARY) tables/tensorflow-summary.csv: $(CV_SUMMARY) scripts/summary2table.rb tensorflow > $@ -$(SUMMARY): $(PA_SUMMARY) $(CV_SUMMARY) - scripts/summary.rb $^ > $@ +$(DATA): $(PA_SUMMARY) $(CV_SUMMARY) mutagenicity/mutagenicity.csv mutagenicity/cdk/mutagenicity-mod-2.new.csv $(PA_DIR)pa-predictions.csv + scripts/data.rb $^ > $@ # PA summary -$(PA_SUMMARY): tables/pa-table.csv +$(PA_SUMMARY): $(PA_DIR)pa-predictions.csv scripts/pa-summary.rb $< > $@ # PA lazar predictions |