diff options
| author | Christoph Helma <helma@in-silico.ch> | 2019-10-28 15:56:23 +0100 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2019-10-28 15:56:23 +0100 |
| commit | 5dbcec8d20b5f1fe3179877ea28cdb72d1e2ba38 (patch) | |
| tree | 7de2379f76ad10db5164cf81fb663ea4d57fb973 /Makefile | |
| parent | ebbd51ce117dc0f5912df6fa25fcce5cb7aaa5fe (diff) | |
discussion, conclusion, abstract
Diffstat (limited to 'Makefile')
| -rw-r--r-- | Makefile | 12 |
1 files changed, 10 insertions, 2 deletions
@@ -40,15 +40,23 @@ LAZAR_SUMMARIES = $(SUMMARIES_DIR)/lazar-all.json $(SUMMARIES_DIR)/lazar-high-co CONFUSION_MATRICES = $(CONFUSION_MATRICES_DIR)/R-SVM.csv $(CONFUSION_MATRICES_DIR)/R-RF.csv $(CONFUSION_MATRICES_DIR)/R-DL.csv $(CONFUSION_MATRICES_DIR)/tensorflow-all.csv $(CONFUSION_MATRICES_DIR)/tensorflow-selected.csv $(CONFUSION_MATRICES_DIR)/lazar-all.csv $(CONFUSION_MATRICES_DIR)/lazar-high-confidence.csv $(CONFUSION_MATRICES_DIR)/lazar-padel-all.csv $(CONFUSION_MATRICES_DIR)/lazar-padel-high-confidence.csv DATA = data/mutagenicity.sdf data/mutagenicity.csv data/mutagenicity-fingerprints.csv +FIGURES = figures/roc.png -all: $(DATA) $(TABLES) mutagenicity.pdf -#all: $(SUMMARIES) $(DATA) $(TABLES) mutagenicity.pdf +all: $(DATA) $(TABLES) $(FIGURES) mutagenicity.pdf include $(PANDOC_SCHOLAR_PATH)/Makefile export: $(DATA) mutagenicity.mustache.md: results.yaml mutagenicity.md mustache $^ > $@ +# figures + +figures/roc.png: figures/results.csv + scripts/roc.R + +figures/results.csv: results.yaml + scripts/results2csv.rb $< > $@ + # tables tables/r-summary.csv: $(R_SUMMARIES) |