diff options
| author | Christoph Helma <helma@in-silico.ch> | 2019-08-14 19:12:37 +0200 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2019-08-14 19:12:37 +0200 |
| commit | b6ad21e340bce9ba2a2ad09fe48c656f0c2e3905 (patch) | |
| tree | 6a248cfe29fb720491559e5973d8c1f1904bcc33 /Makefile | |
| parent | 9a217185e791d6abbe46549cd4e87c1d1a643c05 (diff) | |
directory reorganization, evaluation scripts for R CVs
Diffstat (limited to 'Makefile')
| -rw-r--r-- | Makefile | 24 |
1 files changed, 23 insertions, 1 deletions
@@ -1,8 +1,30 @@ +ARTICLE_FILE = mutagenicity.md +PANDOC_SCHOLAR_PATH = pandoc-scholar +OUTFILE_PREFIX = mutagenicity +DEFAULT_EXTENSIONS = latex pdf docx #odt epub html +#PANDOC_WRITER_OPTIONS = --filter=pandoc-placetable --filter=pandoc-citeproc +TEMPLATE_FILE_LATEX = pandoc-scholar.latex + +include $(PANDOC_SCHOLAR_PATH)/Makefile + +#tables = tables/R-SVM.csv tables/R-RF.csv tables/R-DL.csv + summaries = summaries/mutagenicity-merged-crossvalidations.json summaries/carcinogenicity-crossvalidations.json summaries/pa_mutagenicity_neighbor_sets.json summaries/pa_carcinogenicity_neighbor_sets.json exports = export/mutagenicity-merged.sdf export/mutagenicity-merged.csv export/pa_mutagenicity.csv export/pa_carcinogenicity.csv export/pa-fingerprints.csv export/mutagenicity-merged-fingerprints.csv -all: $(summaries) $(exports) +all: $(summaries) $(exports) #$(tables) + +# confusion matrices + +summaries/confusion-matrices/R-SVM.csv: 10-fold-crossvalidations/R/Sgl-Observations-SVM.csv + scripts/cv-r-confusion-matrix.rb $< > $@ + +summaries/confusion-matrices/R-RF.csv: 10-fold-crossvalidations/R/Sgl-Observations-RF.csv + scripts/cv-r-confusion-matrix.rb $< > $@ + +summaries/confusion-matrices/R-DL.csv: 10-fold-crossvalidations/R/Sgl-Observations-DL.csv + scripts/cv-r-confusion-matrix.rb $< > $@ # summaries |