further cleanup, detailled pa-predictions separated, text modified until results

1 files changed, 1 insertions, 41 deletions

diff --git a/shell.nix b/shell.nix
index 9c16281..1ee567f 100644
--- a/shell.nix
+++ b/shell.nix
@@ -2,42 +2,7 @@ with import <nixpkgs> { };
 let
   R-packages = rWrapper.override { packages = with rPackages; [ ggplot2 Rtsne ]; };
   gems = bundlerEnv { name = "mustache"; gemdir = ./.; };
-  #lazar-gems = bundlerEnv { name = "lazar"; gemdir = ./../lazar; };
   latex-authblk = texlive.combine { inherit (texlive) scheme-medium preprint; };
-  openbabel = stdenv.mkDerivation {
-
-    name = "openbabel-ruby";
-
-    src = fetchurl {
-      url = "https://github.com/openbabel/openbabel/releases/download/openbabel-3-1-1/openbabel-3.1.1-source.tar.bz2";
-      sha256 = "puyDgdWeoypLJByLH715mstSvpSrZM29clBvtOInDmg=";
-    };
-
-    #outputs = [ "lib" ];
-
-    buildInputs = [
-      # openbabel
-      cmake
-      ruby
-      swig
-      boost
-      zlib
-      libxml2
-      cairo
-      eigen
-      pkg-config
-      pcre
-    ];
-
-    configurePhase = ''
-      cmake . -DWITH_MAEPARSER=OFF -DWITH_JSON=OFF -DBUILD_GUI=OFF -DENABLE_TESTS=OFF -DRUN_SWIG=ON -DBINDINGS_ONLY=ON -DRUBY_BINDINGS=ON -DMINIMAL_BUILD=ON -DOPTIMIZE_NATIVE=ON -DCMAKE_INSTALL_PREFIX=$out  -DCMAKE_INSTALL_RPATH:STRING=$out/lib
-    '';
-
-    buildPhase = ''
-      make -j12
-    '';
-      
-  };
 in mkShell {
   name = "mutagenicity-paper";
   buildInputs = [
@@ -45,16 +10,11 @@ in mkShell {
     git
     latex-authblk
     fontconfig
-    #haskellPackages.pandoc-placetable
-    #haskellPackages.pandoc-csv2table
     haskellPackages.pandoc-crossref
     haskellPackages.pandoc-citeproc
-    #haskellPackages.pandoc-include
     R-packages
-    #lazar-gems
     gems
-    #gems.wrappedRuby
-    #openbabel-ruby
+    gems.wrappedRuby
     openbabel
   ];
 }