diff options
Diffstat (limited to 'Makefile')
| -rw-r--r-- | Makefile | 8 |
1 files changed, 3 insertions, 5 deletions
@@ -19,19 +19,17 @@ R_CV_DIR = 10-fold-crossvalidations/R TENSORFLOW_CV_DIR = 10-fold-crossvalidations/tensorflow CONFUSION_MATRICES_DIR = 10-fold-crossvalidations/confusion-matrices -CONFUSION_MATRICES = $(CONFUSION_MATRICES_DIR)/R-SVM.csv $(CONFUSION_MATRICES_DIR)/R-RF.csv $(CONFUSION_MATRICES_DIR)/R-DL.csv $(CONFUSION_MATRICES_DIR)/lazar-all.csv $(CONFUSION_MATRICES_DIR)/lazar-high-confidence.csv $(CONFUSION_MATRICES_DIR)/lazar-padel-all.csv $(CONFUSION_MATRICES_DIR)/lazar-padel-high-confidence.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr.v3.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr2.v3.csv $(CONFUSION_MATRICES_DIR)/tensorflow-nn.v3.csv $(CONFUSION_MATRICES_DIR)/tensorflow-rf.v3.csv +CONFUSION_MATRICES = $(CONFUSION_MATRICES_DIR)/lazar-all.csv $(CONFUSION_MATRICES_DIR)/lazar-high-confidence.csv $(CONFUSION_MATRICES_DIR)/lazar-padel-all.csv $(CONFUSION_MATRICES_DIR)/lazar-padel-high-confidence.csv $(CONFUSION_MATRICES_DIR)/R-RF.csv $(CONFUSION_MATRICES_DIR)/R-SVM.csv $(CONFUSION_MATRICES_DIR)/R-DL.csv $(CONFUSION_MATRICES_DIR)/tensorflow-rf.v3.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr.v3.csv $(CONFUSION_MATRICES_DIR)/tensorflow-lr2.v3.csv $(CONFUSION_MATRICES_DIR)/tensorflow-nn.v3.csv CV_SUMMARY = 10-fold-crossvalidations/summary.yaml # PA predictions PA_DIR = pyrrolizidine-alkaloids PA_LAZAR_DIR = $(PA_DIR)/lazar -#PA_LAZAR_MP2D_DIR = $(PA_LAZAR_DIR)/mp2d -#PA_LAZAR_PADEL_DIR = $(PA_LAZAR_DIR)/padel # manuscript TABLES = tables/lazar-summary.csv tables/r-summary.csv tables/tensorflow-summary.csv tables/pa-tab.tex -FIGURES = figures/roc.png figures/tsne-mp2d.png figures/tsne-padel.png #figures/pa-predictions.png +FIGURES = figures/roc.png figures/tsne-mp2d.png figures/tsne-padel.png all: $(TABLES) $(FIGURES) mutagenicity.pdf include $(PANDOC_SCHOLAR_PATH)/Makefile @@ -57,7 +55,7 @@ figures/roc.png: figures/roc.csv scripts/roc.R figures/roc.csv: $(CV_SUMMARY) - scripts/results2csv.rb $< > $@ + scripts/summary2roc.rb $< > $@ # tables tables/pa-tab.tex: scripts/pa-table.rb |