diff options
Diffstat (limited to 'Makefile')
| -rw-r--r-- | Makefile | 26 |
1 files changed, 21 insertions, 5 deletions
@@ -26,6 +26,10 @@ CV_SUMMARY = 10-fold-crossvalidations/summary.yaml # PA predictions PA_DIR = pyrrolizidine-alkaloids PA_LAZAR_DIR = $(PA_DIR)/lazar +PA_R_DIR = $(PA_DIR)/R +PA_TF_DIR = $(PA_DIR)/tensorflow + +PA_PREDICTIONS = $(PA_LAZAR_DIR)/pa-mp2d-predictions.csv $(PA_LAZAR_DIR)/pa-padel-predictions.csv $(PA_R_DIR)/PA.RF.outcome.csv $(PA_R_DIR)/PA.SVM.outcome.csv $(PA_R_DIR)/PA.DL.outcome.csv $(PA_TF_DIR)/pred.lr.v3-ext-Padel-2D.csv $(PA_TF_DIR)/pred.lr2.v3-ext-Padel-2D.csv $(PA_TF_DIR)/pred.rf.v3-ext-Padel-2D.csv $(PA_TF_DIR)/pred.nn.v3-ext-Padel-2D.csv # manuscript TABLES = tables/lazar-summary.csv tables/r-summary.csv tables/tensorflow-summary.csv tables/pa-tab.tex @@ -58,7 +62,7 @@ figures/roc.csv: $(CV_SUMMARY) scripts/summary2roc.rb $< > $@ # tables -tables/pa-tab.tex: scripts/pa-table.rb +tables/pa-tab.tex: scripts/pa-table.rb $(PA_PREDICTIONS) scripts/pa-table.rb > $@ tables/lazar-summary.csv: $(CV_SUMMARY) @@ -112,15 +116,27 @@ $(CONFUSION_MATRICES_DIR)/R-DL.csv: $(R_CV_DIR)/Sgl-Observations-DL.csv scripts/cv-r-confusion-matrix.rb $< > $@ ## tensorflow -$(CONFUSION_MATRICES_DIR)/tensorflow-lr.v3.csv: $(TENSORFLOW_CV_DIR)/pred.lr.v3.sorted.csv +$(TENSORFLOW_CV_DIR)/pred.lr.v3.norm.sorted.csv: $(TENSORFLOW_CV_DIR)/pred.lr.v3.sorted.csv + sort -n $< > $@ + +$(TENSORFLOW_CV_DIR)/pred.lr2.v3.norm.sorted.csv: $(TENSORFLOW_CV_DIR)/pred.lr2.v3.sorted.csv + sort -n $< > $@ + +$(TENSORFLOW_CV_DIR)/pred.nn.v3.norm.sorted.csv: $(TENSORFLOW_CV_DIR)/pred.nn.v3.sorted.csv + sort -n $< > $@ + +$(TENSORFLOW_CV_DIR)/pred.rf.v3.norm.sorted.csv: $(TENSORFLOW_CV_DIR)/pred.rf.v3.sorted.csv + sort -n $< > $@ + +$(CONFUSION_MATRICES_DIR)/tensorflow-lr.v3.csv: $(TENSORFLOW_CV_DIR)/pred.lr.v3.norm.sorted.csv scripts/cv-tensorflow-confusion-matrix.rb $< > $@ -$(CONFUSION_MATRICES_DIR)/tensorflow-lr2.v3.csv: $(TENSORFLOW_CV_DIR)/pred.lr2.v3.sorted.csv +$(CONFUSION_MATRICES_DIR)/tensorflow-lr2.v3.csv: $(TENSORFLOW_CV_DIR)/pred.lr2.v3.norm.sorted.csv scripts/cv-tensorflow-confusion-matrix.rb $< > $@ -$(CONFUSION_MATRICES_DIR)/tensorflow-nn.v3.csv: $(TENSORFLOW_CV_DIR)/pred.nn.v3.sorted.csv +$(CONFUSION_MATRICES_DIR)/tensorflow-nn.v3.csv: $(TENSORFLOW_CV_DIR)/pred.nn.v3.norm.sorted.csv scripts/cv-tensorflow-confusion-matrix.rb $< > $@ -$(CONFUSION_MATRICES_DIR)/tensorflow-rf.v3.csv: $(TENSORFLOW_CV_DIR)/pred.rf.v3.sorted.csv +$(CONFUSION_MATRICES_DIR)/tensorflow-rf.v3.csv: $(TENSORFLOW_CV_DIR)/pred.rf.v3.norm.sorted.csv scripts/cv-tensorflow-confusion-matrix.rb $< > $@ |