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Diffstat (limited to 'mutagenicity.md')
| -rw-r--r-- | mutagenicity.md | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/mutagenicity.md b/mutagenicity.md index d05cbc7..6abd497 100644 --- a/mutagenicity.md +++ b/mutagenicity.md @@ -514,13 +514,15 @@ Pyrrolizidine alkaloid mutagenicity predictions ----------------------------------------------- Mutagenicity predictions from all investigated models for 602 pyrrolizidine -alkaloids (PAs) are summarized in Table 4. A CSV table with all predictions can be +alkaloids (PAs) are shown in Table 4. A CSV table with all predictions can be downloaded from https://git.in-silico.ch/mutagenicity-paper/tables/pa-table.csv -**TODO** **Verena und Philipp** Koennt Ihr bitte stichprobenweise die Tabelle ueberpruefen, mir verrutscht bei der Auswertung immer gerne etwas. +**TODO** **Verena und Philipp** Koennt Ihr bitte stichprobenweise die Tabelle ueberpruefen \input{tables/pa-tab.tex} +@tbl:pa-summary summarises the number of positive and negative mutagenicity predictions for all investigated models. + ```{#tbl:pa-summary .table file="tables/pa-summary.csv" caption="Summary of pyrrolizidine alkaloid mutagenicity predictions"} ``` @@ -532,6 +534,7 @@ maintaining the high-dimensional distances of the objects. Similar objects are represented by nearby points and dissimilar objects are represented by distant points. + @fig:tsne-mp2d shows the t-SNE of pyrrolizidine alkaloids (PA) and the mutagenicity training data in MP2D space (Tanimoto/Jaccard similarity). {#fig:tsne-mp2d} |