diff options
Diffstat (limited to 'scripts/pa-tex-table.rb')
| -rwxr-xr-x | scripts/pa-tex-table.rb | 30 |
1 files changed, 17 insertions, 13 deletions
diff --git a/scripts/pa-tex-table.rb b/scripts/pa-tex-table.rb index 06f7b26..840df13 100755 --- a/scripts/pa-tex-table.rb +++ b/scripts/pa-tex-table.rb @@ -2,23 +2,23 @@ puts ' \definecolor{red}{rgb}{1,0,0} -\definecolor{lightred}{rgb}{0.5,0,0} +\definecolor{darkred}{rgb}{0.5,0,0} \definecolor{green}{rgb}{0,1,0} -\definecolor{lightgreen}{rgb}{0,0.5,0} +\definecolor{darkgreen}{rgb}{0,0.5,0} \definecolor{grey}{rgb}{0.5,0.5,0.5} \tiny \begin{longtable}{rcccccccccc} \caption{Summary of pyrrolizidine alkaloid predictions: red: mutagen, green: non-mutagen, grey: no prediction, dark red/green: low confidence} \\\\ \label{tab:pa} - & & \multicolumn{2}{c}{lazar} & \multicolumn{3}{c}{R} & \multicolumn{4}{c}{Tensorflow}\\\\ -ID & Measured & MP2D & PaDEL & DL & RF & SVM & LR-sgd & LR-scikit & NN & RF \\\\ +PubChem & & \multicolumn{2}{c}{lazar} & \multicolumn{3}{c}{R} & \multicolumn{4}{c}{Tensorflow}\\\\ +CID & Measured & MP2D & PaDEL & DL & RF & SVM & LR-sgd & LR-scikit & NN & RF \\\\ \hline \renewcommand{\arraystretch}{0.075} ' File.read(ARGV[0]).each_line do |l| unless l.match("SMILES") - id,cid,name,smi,cansmi,exp,lazar_MP2D,lazar_MP2D_high_confidence,lazar_PaDEL,lazar_PaDEL_high_confidence,r_DL,r_RF,r_SVM,tf_lr_sgd,tf_lr_scikit,tf_NN,tf_RF = l.chomp.split(",") - row = id + id,cid,smi,cansmi,exp,lazar_MP2D,lazar_MP2D_high_confidence,lazar_PaDEL,lazar_PaDEL_high_confidence,r_DL,r_RF,r_SVM,tf_lr_sgd,tf_lr_scikit,tf_NN,tf_RF = l.chomp.split(",") + row = cid if exp == "1" row += ' & \cellcolor{red}' elsif exp == "0" @@ -26,17 +26,21 @@ File.read(ARGV[0]).each_line do |l| else row += ' & \cellcolor{grey}' end - if lazar_MP2D == "1" - lazar_MP2D_high_confidence == "F" ? row += ' & \cellcolor{lightred}' : row += ' & \cellcolor{red}' - elsif lazar_MP2D == "0" - lazar_MP2D_high_confidence == "F" ? row += ' & \cellcolor{lightgreen}' : row += ' & \cellcolor{green}' + if lazar_MP2D == "1" and lazar_MP2D_high_confidence == "F" + row += ' & \cellcolor{darkred}' + elsif lazar_MP2D == "1" and lazar_MP2D_high_confidence == "T" + row += ' & \cellcolor{red}' + elsif lazar_MP2D == "0" and lazar_MP2D_high_confidence == "F" + row += ' & \cellcolor{darkgreen}' + elsif lazar_MP2D == "0" and lazar_MP2D_high_confidence == "T" + row += ' & \cellcolor{green}' else - row += '& \cellcolor{grey} ' + row += ' & \cellcolor{grey}' end if lazar_PaDEL == "1" - lazar_PaDEL_high_confidence == "F" ? row += ' & \cellcolor{lightred}' : row += ' & \cellcolor{red}' + lazar_PaDEL_high_confidence == "F" ? row += ' & \cellcolor{darkred}' : row += ' & \cellcolor{red}' elsif lazar_PaDEL == "0" - lazar_PaDEL_high_confidence == "F" ? row += ' & \cellcolor{lightgreen}' : row += ' & \cellcolor{green}' + lazar_PaDEL_high_confidence == "F" ? row += ' & \cellcolor{darkgreen}' : row += ' & \cellcolor{green}' else row += ' & \cellcolor{grey}' end |