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FROM base/archlinux
MAINTAINER in-silico toxicology GmbH
RUN pacman-db-upgrade
RUN pacman -Syyu --noconfirm
RUN pacman -S --noconfirm \
base-devel \
boost-libs \
cmake \
eigen3 \
fontconfig \
gcc-fortran \
git \
gsl \
jre10-openjdk-headless \
mongodb \
mongodb-tools \
r \
ruby \
swig \
neovim \
catdoc \
python \
python-pip \
fish \
wget
RUN pacman -Scc --noconfirm
RUN useradd -ms /bin/bash ist
RUN echo "ist ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers
RUN mkdir -p /data/db
RUN R -e "install.packages('Rserve', repos='http://rforge.net/')"
RUN pip install xlsx2csv
USER ist
WORKDIR /home/ist
RUN echo 'gem: --user-install --no-document' > ~/.gemrc
RUN export GEM_HOME=$(ruby -e 'print Gem.user_dir')
ENV PATH $PATH:$GEM_HOME/bin
#RUN bundle config --global silence_root_warning 1
RUN git clone https://github.com/opentox/lazar.git
WORKDIR lazar
RUN git checkout "development"
RUN ruby ext/lazar/extconf.rb
RUN gem install bundler rake
RUN bundle install
RUN git checkout -b "mutanew"
#USER root
# set environment vars
# start mongo and R
USER ist
WORKDIR /home/ist
#EXPOSE 22
#ENTRYPOINT ["/usr/bin/sshd -D"]
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