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:javascript
function showcircle() {
$("img.circle").show();
};
%div.well
%h3.help-block
Select an endpoint:
#tabs
%ul.nav.nav-tabs{:id=>"modelTab", :role=>"tablist"}
- @prediction_models.each_with_index do |m, idx|
%li{:class => ("active" if idx == 0)}
%a{:href => "#model_#{idx}", :id => "linkTab#{idx}", data: {toggle:"tab"}}
= "#{idx+1}. #{m[:pcp_model] ? "Physchem & Proteomics" : "Physchem" }"
%div.tab-content
- @prediction_models.each_with_index do |m, idx|
- m[:pc_model] ? (example = @example_pc; type = "pc"; relevant_features = @pc_relevant_features) : (example = @example_pcp; type = "pcp"; relevant_features = @pcp_relevant_features)
#model.tab-pane{:id=>"#{idx}", :class => ("active" if idx == 0)}
%b Model:
%br
Name:
= m.model.name
%br
Type: regression
%br
Source:
%a{:href=>"#{m.source}", :alt=>"source", :rel=>"external"}
= m.source
%br
Species:
= m.species
%br
Training nanoparticles:
= m.model.training_dataset.nanoparticles.size
%br
Endpoint:
= m.endpoint
%br
Unit:
= m.unit
%br
%b Algorithms:
%br
Similarity:
%a{:href=> "http://www.rubydoc.info/gems/lazar/OpenTox%2F#{m.model.algorithms["similarity"]["method"].sub("::", "%2F")}", :rel=>"external"}
= m.model.algorithms["similarity"]["method"]
= ", min: #{m.model.algorithms["similarity"]["min"]}"
%br
Prediction:
%a{:href=>"http://www.rubydoc.info/gems/lazar/OpenTox%2F#{m.model.algorithms["prediction"]["method"].sub("::","%2f")}", :rel=>"external"}
= m.model.algorithms["prediction"]["method"]
%br
Feature selection:
= m.model.algorithms["feature_selection"]["method"].split(".").last
%br
Descriptors:
= m.model.algorithms["descriptors"]["method"]+","
= m.model.algorithms["descriptors"]["categories"]
%p
%b Independent crossvalidations (log2 transformed):
- crossvalidations =[]
- m.repeated_crossvalidation.crossvalidation_ids.each{|cv| c = OpenTox::Validation::CrossValidation.find(cv); crossvalidations << c}
%div.row{:id=>"validations#{m.id}", :style=>"background-color:#f5f5f5;"}
- crossvalidations.each do |cv|
%span.col-xs-4.col-sm-4.col-md-4.col-lg-4
= "Num folds:\t"
= cv.folds
%br
= "Num instances:\t"
= cv.nr_instances
%br
= "Num unpredicted"
= cv.nr_unpredicted
%br
%a.ht5{:href=>"https://en.wikipedia.org/wiki/Root-mean-square_deviation", :rel=>"external"} RMSE:
= cv.rmse.round(3) if cv.rmse
%br
%a.ht5{:href=>"https://en.wikipedia.org/wiki/Mean_absolute_error", :rel=>"external"} MAE:
= cv.mae.round(3) if cv.mae
%br
%a.ht5{:href=>"https://en.wikipedia.org/wiki/Coefficient_of_determination", :rel=>"external"}= "R"+"<sup>2</sup>"+":"
= cv.r_squared.round(3) if cv.r_squared
%br
%b QMRF report
%p
%a.btn.btn-default{:href=>to('/qmrf-report/'+m.id), :rel=>"external"} download
%hr
%form{:id=>idx, :role=>"form", :action=> to("/predict"), :method=>"post"}
%h3.help-block
Please characterise a nanoparticle:
#input
%div.form-group
// type pcp || pc
%input{:id=>"type",:type=>"hidden",:name=>"type",:value=>"#{type}"}
// example data to compare
%input{:id=>"example_core",:type=>"hidden",:name=>"example_core",:value=>"#{example.core}"}
%input{:id=>"example_coating",:type=>"hidden",:name=>"example_coating",:value=>"#{example.coating}"}
%input{:id=>"example_pc",:type=>"hidden",:name=>"example_pc",:value=>"#{example.properties}"}
- size = relevant_features.size
%input{:id=>"size",:type=>"hidden",:name=>"size",:value=>size}
%input{:id=>"id",:type=>"hidden",:name=>"example_id",:value=>example.id}
// input form parameters to transfer
%div.form-group
%label{:for=>"selCore#{idx}"} Core
/%p= example.core["name"]
%select.form-control{:id=>"selCore#{idx}", :autocomplete=>"off", :name=>"input_core",:value=>example.core["name"]}
%option{:selected => ("selected" if example.core["name"] == "Ag")} Ag
%option{:selected => ("selected" if example.core["name"] == "Au")} Au
%input{:id=>"input_core",:type=>"hidden",:name=>"in_core",:value=>"#{example.core}"}
//%h5 Coating
//%input.input-sm.form-control{:id=>"coating",:type=>"text",:disabled=>"disabled",:name=>"coating",:value=>example.coating[0]["name"]}
%input.input-sm.form-control{:id=>"coating",:type=>"hidden",:name=>"input_coating",:value=>example.coating[0]["name"]}
%input{:id=>"input_coating",:type=>"hidden",:name=>"in_coating",:value=>example.coating}
// prediction model id
%input{:id=>"prediction_model",:type=>"hidden",:name=>"prediction_model",:value=>m.id}
//sort the relevant features
- pc = relevant_features.collect{|f| f if f.category == "P-CHEM"}.compact
- pcp = relevant_features.collect{|f| f if f.category == "Proteomics"}.compact
- relevant_features = pc.sort_by{|f| f.name} + pcp.sort_by{|f| f.name}
- relevant_features.each_with_index do |relf,id|
- feature = relf
- v = example.properties.find{|id,v| id == feature.id.to_s }
- name = feature.name
- if feature[:conditions] && !feature[:conditions]["MEDIUM"].blank?
- name = feature.name + " / " + feature[:conditions]["MEDIUM"]
- else
- name = feature.name
- val = !v.nil? ? v[1] : "-"
- id = id + 1
- if feature.category == "Proteomics"
%h5
%a{:href=>"http://www.uniprot.org/uniprot/#{name}", :rel=>"external"}= name + (feature.unit.blank? ? "" : " (#{feature.unit})")
- if feature.category == "P-CHEM"
%h5
%a.descriptor{:href=>$npo[feature.name], :rel=>"external"}= name + (feature.unit.blank? ? "" : " (#{feature.unit})")
// input physchem parameters
%input.input-sm.form-control{:id=>id,:type=>"text",:name=>"input_value_#{id}",:value=>"#{val[0] if val[0]}", :disabled=>("disabled" if val[0] == "-")}
- if val[0] == "-"
%input{:id=>id,:type=>"hidden",:name=>"input_value_#{id}",:value=>"-"}
%input{:id=>id,:type=>"hidden",:name=>"input_key_#{id}",:value=>feature.id}
%hr
#predict
%button.btn.btn-success{:id=>"submitbutton", :type=>"submit", :onclick=>"showcircle();"}
Find similar nano particles
%span.glyphicon.glyphicon-chevron-right{:id=>"span"}
%img{:src=>"/images/wait30trans.gif", :id=>"circle", :class=>"circle", :alt=>"wait", :style=>"display:none;"}
|
