diff options
| author | Christoph Helma <helma@in-silico.ch> | 2012-03-09 22:04:06 +0000 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2012-03-09 22:04:06 +0000 |
| commit | e11e5c3a521561cc42b80c667c12e71438ea12e1 (patch) | |
| tree | 88c90e89e6316698b211b7a280a388a8520f2c1b | |
| parent | edfdc45754c05507deb63b16cb09dbdca6c8400f (diff) | |
gemspec updated
| -rw-r--r-- | README.markdown | 32 | ||||
| -rw-r--r-- | opentox-client.gemspec | 1 |
2 files changed, 4 insertions, 29 deletions
diff --git a/README.markdown b/README.markdown index 5f12ad9..f4e20f4 100644 --- a/README.markdown +++ b/README.markdown @@ -6,38 +6,12 @@ Thin Ruby wrapper for the [OpenTox](http://www.opentox.org) REST API Installation ------------ - sudo gem install opentox-ruby-minimal + gem install opentox-client -opentox-ruby depends on [rapper](http://librdf.org/raptor/rapper.html) for parsing OWL-DL in RDFXML format. - -Quickstart ----------- - -This example shows how to create a lazar model and predict a compound, it assumes that you have access to a working installation of OpenTox services with corresponding settings in $HOME/.opentox/config. Run the following code in irb or from a ruby script: - - require 'rubygems' - require 'opentox-ruby' - - # Authenticate - subjectid = OpenTox::Authorization.authenticate(USER,PASSWORD) - - # Upload a dataset - training_dataset = OpenTox::Dataset.create_from_csv_file(TRAINING_DATASET, subjectid) - - # Create a prediction model - model_uri = OpenTox::Algorithm::Lazar.new.run({:dataset_uri => training_dataset.uri, :subjectid => subjectid}).to_s - lazar = OpenTox::Model::Lazar.find model_uri, subjectid - - # Predict a compound - compound = OpenTox::Compound.from_smiles("c1ccccc1NN") - prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => subjectid) - prediction = OpenTox::LazarPrediction.find(prediction_uri, subjectid) - puts prediction.to_yaml - -[API documentation](http://rdoc.info/gems/opentox-ruby-minimal) +[API documentation](http://rdoc.info/gems/opentox-client) ------------------------------------------------------------------- Copyright --------- -Copyright (c) 2009-2011 Christoph Helma, Martin Guetlein, Micha Rautenberg, Andreas Maunz, David Vorgrimmler, Denis Gebele. See LICENSE for details. +Copyright (c) 2009-2012 Christoph Helma, Martin Guetlein, Micha Rautenberg, Andreas Maunz, David Vorgrimmler, Denis Gebele. See LICENSE for details. diff --git a/opentox-client.gemspec b/opentox-client.gemspec index f8fb9a4..198a6ed 100644 --- a/opentox-client.gemspec +++ b/opentox-client.gemspec @@ -9,6 +9,7 @@ Gem::Specification.new do |s| s.homepage = "http://github.com/opentox/opentox-client" s.summary = %q{Ruby wrapper for the OpenTox REST API} s.description = %q{Ruby wrapper for the OpenTox REST API (http://www.opentox.org)} + s.license = 'GPL-3' s.rubyforge_project = "opentox-client" |