Merge branch 'release/v0.0.3'HEADv0.0.3master

1 files changed, 0 insertions, 99 deletions

diff --git a/test/dataset.rb b/test/dataset.rb
deleted file mode 100644
index b3190b8..0000000
--- a/test/dataset.rb
+++ /dev/null
@@ -1,99 +0,0 @@
-require 'test/unit'
-$LOAD_PATH << File.join(File.dirname(__FILE__),'..','lib')
-require File.join File.dirname(__FILE__),'..','lib','opentox-client.rb'
-DATASET = "http://ot-dev.in-silico.ch/dataset"
-AA ||= "https://opensso.in-silico.ch"
-AA_USER = "guest"
-AA_PASS = "guest"
-@@subjectid = OpenTox::Authorization.authenticate(AA_USER,AA_PASS)
-
-DATA_DIR = File.join(File.dirname(__FILE__),"data")
-# TODO: add subjectids
-
-
-class DatasetTest < Test::Unit::TestCase
-
-  def test_all
-    puts @@subjectid
-    datasets = OpenTox::Dataset.all(DATASET, @@subjectid)
-    assert_equal OpenTox::Dataset, datasets.first.class
-  end
-
-  def test_create_empty
-    d = OpenTox::Dataset.create(DATASET, @@subjectid)
-    assert_equal OpenTox::Dataset, d.class
-    assert_match /#{DATASET}/, d.uri.to_s
-    d.delete
-  end
-
-  def test_create_from_file
-    d = OpenTox::Dataset.from_file DATASET, File.join(DATA_DIR,"EPAFHM.mini.csv"), @@subjectid
-    assert_equal OpenTox::Dataset, d.class
-    assert_equal d.uri, d[RDF::XSD.anyURI]
-    assert_equal "EPAFHM.mini",  d.metadata[RDF::URI("http://purl.org/dc/elements/1.1/title")].first.to_s # DC.title is http://purl.org/dc/terms/title
-    assert_equal "EPAFHM.mini",  d[RDF::URI("http://purl.org/dc/elements/1.1/title")]
-    d.delete
-    assert_raise OpenTox::NotFoundError do
-      d.get
-    end
-  end
-
-  def test_from_yaml
-    @dataset = OpenTox::Dataset.from_file DATASET, File.join(DATA_DIR,"hamster_carcinogenicity.yaml"), @@subjectid
-    assert_equal OpenTox::Dataset, @dataset.class
-    assert_equal "hamster_carcinogenicity", @dataset[RDF::URI("http://purl.org/dc/elements/1.1/title")]
-    hamster_carc?
-    @dataset.delete
-  end
-
-=begin
-# TODO: fix (mime type??0 and add Egons example
-  def test_sdf_with_multiple_features
-    @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/CPDBAS_v5c_1547_29Apr2008part.sdf"
-    assert_equal OpenTox::Dataset, @dataset.class
-    puts @dataset.features.size
-    puts @dataset.compounds.size
-    @dataset.delete
-  end
-=end
-
-  def test_multicolumn_csv
-    @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/multicolumn.csv", @@subjectid
-    assert_equal 5, @dataset.features.size
-    assert_equal 4, @dataset.compounds.size
-    @dataset.delete
-  end
-
-  def test_from_csv
-    @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/hamster_carcinogenicity.csv", @@subjectid
-    assert_equal OpenTox::Dataset, @dataset.class
-    hamster_carc?
-    @dataset.delete
-  end
-
-=begin
-  def test_save
-    d = OpenTox::Dataset.create DATASET
-    d.metadata
-    d.metadata[RDF::DC.title] = "test"
-    d.save
-    # TODO: save does not work with datasets
-    #puts d.response.code.inspect
-    #assert_equal "test", d.metadata[RDF::DC.title] # should reload metadata
-    d.delete
-  end
-=end
-=begin
-=end
-
-
-  def hamster_carc?
-    assert_kind_of OpenTox::Dataset, @dataset
-    #require 'yaml'
-    #puts @dataset.data_entries.to_yaml
-    assert_equal 85, @dataset.data_entries.size
-    assert_equal 85, @dataset.compounds.size
-    assert_equal 1, @dataset.features.size
-    assert_equal @dataset.uri, @dataset[RDF::XSD.anyURI]
-  end
-end