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-rw-r--r--lib/environment.rb84
1 files changed, 45 insertions, 39 deletions
diff --git a/lib/environment.rb b/lib/environment.rb
index cfc875d..59578c1 100644
--- a/lib/environment.rb
+++ b/lib/environment.rb
@@ -1,4 +1,3 @@
-require "ot-logger"
# set default environment
ENV['RACK_ENV'] = 'production' unless ENV['RACK_ENV']
@@ -12,8 +11,8 @@ TMP_DIR = File.join(basedir, "tmp")
LOG_DIR = File.join(basedir, "log")
if File.exist?(config_file)
- @@config = YAML.load_file(config_file)
- raise "could not load config, config file: "+config_file.to_s unless @@config
+ CONFIG = YAML.load_file(config_file)
+ raise "could not load config, config file: "+config_file.to_s unless CONFIG
else
FileUtils.mkdir_p TMP_DIR
FileUtils.mkdir_p LOG_DIR
@@ -24,54 +23,61 @@ else
end
# database
-if @@config[:database]
- ['dm-core', 'dm-serializer', 'dm-timestamps', 'dm-types', 'dm-migrations', 'dm-validations' ].each{|lib| require lib }
- case @@config[:database][:adapter]
- when /sqlite/i
- db_dir = File.join(basedir, "db")
- FileUtils.mkdir_p db_dir
- DataMapper::setup(:default, "sqlite3://#{db_dir}/opentox.sqlite3")
- else
- DataMapper.setup(:default, {
- :adapter => @@config[:database][:adapter],
- :database => @@config[:database][:database],
- :username => @@config[:database][:username],
- :password => @@config[:database][:password],
- :host => @@config[:database][:host]})
- end
-end
+`redis-server /opt/redis/redis.conf` unless File.exists? "/var/run/redis.pid"
+Ohm.connect :thread_safe => true
# load mail settings for error messages
load File.join config_dir,"mail.rb" if File.exists?(File.join config_dir,"mail.rb")
logfile = "#{LOG_DIR}/#{ENV["RACK_ENV"]}.log"
-#LOGGER = MyLogger.new(logfile,'daily') # daily rotation
-LOGGER = MyLogger.new(logfile) # no rotation
+#LOGGER = OTLogger.new(logfile,'daily') # daily rotation
+LOGGER = OTLogger.new(logfile) # no rotation
LOGGER.formatter = Logger::Formatter.new #this is neccessary to restore the formating in case active-record is loaded
-if @@config[:logger] and @@config[:logger] == "debug"
+if CONFIG[:logger] and CONFIG[:logger] == "debug"
LOGGER.level = Logger::DEBUG
else
LOGGER.level = Logger::WARN
end
-if File.exist?(user_file)
- @@users = YAML.load_file(user_file)
-else
- FileUtils.cp(File.join(File.dirname(__FILE__), 'templates/users.yaml'), user_file)
- puts "Please edit #{user_file} and restart your application."
- exit
-end
+# Regular expressions for parsing classification data
+TRUE_REGEXP = /^(true|active|1|1.0|tox)$/i
+FALSE_REGEXP = /^(false|inactive|0|0.0|low tox)$/i
+
+# Task durations
+DEFAULT_TASK_MAX_DURATION = 36000
+#EXTERNAL_TASK_MAX_DURATION = 36000
+
+# OWL Namespaces
+class OwlNamespace
+
+ attr_accessor :uri
+ def initialize(uri)
+ @uri = uri
+ end
+
+ def [](property)
+ @uri+property.to_s
+ end
+
+ def type # for RDF.type
+ "#{@uri}type"
+ end
+
+ def method_missing(property)
+ @uri+property.to_s
+ end
-begin
- 0 < @@users[:users].keys.length
-rescue
- raise "Please edit #{user_file} and restart your application. Create at least one user with password."
end
-# Regular expressions for parsing classification data
-TRUE_REGEXP = /^(true|active|1|1.0)$/i
-FALSE_REGEXP = /^(false|inactive|0|0.0)$/i
+AA_SERVER = CONFIG[:authorization] ? (CONFIG[:authorization][:server] ? CONFIG[:authorization][:server] : nil) : nil
+CONFIG[:authorization][:authenticate_request] = [""] unless CONFIG[:authorization][:authenticate_request]
+CONFIG[:authorization][:authorize_request] = [""] unless CONFIG[:authorization][:authorize_request]
+CONFIG[:authorization][:free_request] = [""] unless CONFIG[:authorization][:free_request]
+
+RDF = OwlNamespace.new 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'
+OWL = OwlNamespace.new 'http://www.w3.org/2002/07/owl#'
+DC = OwlNamespace.new 'http://purl.org/dc/elements/1.1/'
+OT = OwlNamespace.new 'http://www.opentox.org/api/1.1#'
+OTA = OwlNamespace.new 'http://www.opentox.org/algorithmTypes.owl#'
+XSD = OwlNamespace.new 'http://www.w3.org/2001/XMLSchema#'
-# Task durations
-DEFAULT_TASK_MAX_DURATION = 3600
-EXTERNAL_TASK_MAX_DURATION = 3600