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require 'test/unit'
$LOAD_PATH << File.join(File.dirname(__FILE__),'..','lib')
require File.join File.dirname(__FILE__),'..','lib','opentox-client.rb'
DATASET = "http://ot-dev.in-silico.ch/dataset"
AA ||= "https://opensso.in-silico.ch"
AA_USER = "guest"
AA_PASS = "guest"
@@subjectid = OpenTox::Authorization.authenticate(AA_USER,AA_PASS)
DATA_DIR = File.join(File.dirname(__FILE__),"data")
# TODO: add subjectids
class DatasetTest < Test::Unit::TestCase
def test_all
puts @@subjectid
datasets = OpenTox::Dataset.all(DATASET, @@subjectid)
assert_equal OpenTox::Dataset, datasets.first.class
end
def test_create_empty
d = OpenTox::Dataset.create(DATASET, @@subjectid)
assert_equal OpenTox::Dataset, d.class
assert_match /#{DATASET}/, d.uri.to_s
d.delete
end
def test_create_from_file
d = OpenTox::Dataset.from_file DATASET, File.join(DATA_DIR,"EPAFHM.mini.csv"), @@subjectid
assert_equal OpenTox::Dataset, d.class
assert_equal d.uri, d[RDF::XSD.anyURI]
assert_equal "EPAFHM.mini", d.metadata[RDF::URI("http://purl.org/dc/elements/1.1/title")].first.to_s # DC.title is http://purl.org/dc/terms/title
assert_equal "EPAFHM.mini", d[RDF::URI("http://purl.org/dc/elements/1.1/title")]
d.delete
assert_raise OpenTox::NotFoundError do
d.get
end
end
def test_from_yaml
@dataset = OpenTox::Dataset.from_file DATASET, File.join(DATA_DIR,"hamster_carcinogenicity.yaml"), @@subjectid
assert_equal OpenTox::Dataset, @dataset.class
assert_equal "hamster_carcinogenicity", @dataset[RDF::URI("http://purl.org/dc/elements/1.1/title")]
hamster_carc?
@dataset.delete
end
=begin
# TODO: fix (mime type??0 and add Egons example
def test_sdf_with_multiple_features
@dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/CPDBAS_v5c_1547_29Apr2008part.sdf"
assert_equal OpenTox::Dataset, @dataset.class
puts @dataset.features.size
puts @dataset.compounds.size
@dataset.delete
end
=end
def test_multicolumn_csv
@dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/multicolumn.csv", @@subjectid
assert_equal 5, @dataset.features.size
assert_equal 4, @dataset.compounds.size
@dataset.delete
end
def test_from_csv
@dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/hamster_carcinogenicity.csv", @@subjectid
assert_equal OpenTox::Dataset, @dataset.class
hamster_carc?
@dataset.delete
end
=begin
def test_save
d = OpenTox::Dataset.create DATASET
d.metadata
d.metadata[RDF::DC.title] = "test"
d.save
# TODO: save does not work with datasets
#puts d.response.code.inspect
#assert_equal "test", d.metadata[RDF::DC.title] # should reload metadata
d.delete
end
=end
=begin
=end
def hamster_carc?
assert_kind_of OpenTox::Dataset, @dataset
#require 'yaml'
#puts @dataset.data_entries.to_yaml
assert_equal 85, @dataset.data_entries.size
assert_equal 85, @dataset.compounds.size
assert_equal 1, @dataset.features.size
assert_equal @dataset.uri, @dataset[RDF::XSD.anyURI]
end
end
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