diff options
Diffstat (limited to 'lib/ontology.rb')
| -rw-r--r-- | lib/ontology.rb | 43 |
1 files changed, 16 insertions, 27 deletions
diff --git a/lib/ontology.rb b/lib/ontology.rb index ad7ba7b..2c20c59 100644 --- a/lib/ontology.rb +++ b/lib/ontology.rb @@ -4,13 +4,9 @@ module OpenTox def self.querystring(classname="Endpoints") return CGI.escape("PREFIX ot:<http://www.opentox.org/api/1.1#> - PREFIX ota:<http://www.opentox.org/algorithms.owl#> - PREFIX owl:<http://www.w3.org/2002/07/owl#> PREFIX dc:<http://purl.org/dc/elements/1.1/> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> - PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX otee:<http://www.opentox.org/echaEndpoints.owl#> - PREFIX toxcast:<http://www.opentox.org/toxcast.owl#> select * where { ?endpoint rdfs:subClassOf otee:#{classname}. @@ -18,25 +14,22 @@ module OpenTox }") end - def self.make_option_list(endpoint="Endpoints", level=1) - out = "" - results = echa_endpoints(endpoint) rescue results = [] - results.each do |result| - r = result.split(',') - endpointname = r.first.split("#").last - title = r[1..r.size-1] - out += "<option value='#{r.first}' id='#{endpointname}' class='level_#{level}'>#{title}</option>\n" - out += make_option_list(endpointname, level + 1) + # Gets Endpoint name of a specific endpoint URI + # @param [String] endpointuri e.G. "http://www.opentox.org/echaEndpoints.owl#EcotoxicEffects" + # @return [String] endpointname: e.G.: "Ecotoxic effects" + def self.get_endpoint_name(endpointuri) + qstring = CGI.escape("PREFIX dc:<http://purl.org/dc/elements/1.1/> + select distinct ?title + where { + ?endpoint dc:title ?title. + FILTER (?endpoint = <#{endpointuri}>) + }") + begin + RestClientWrapper.get("#{ONTOLOGY_SERVER}?query=#{qstring}",:accept => "text/csv").collect{|l| l.gsub("\r\n", "") if l.to_s != "title\r\n"}.uniq.compact.sort.first.to_s + rescue + LOGGER.warn "OpenTox::Ontology::Echa.get_endpoint_name(#{endpointuri}) ontology service is not reachable." + [] end - return out - end - - def self.endpoint_option_list(include_blank=true) - out = "<select id='endpoint' name='endpoint'>\n" - out += "<option value='' id='please_select'>Please select</option>\n" if include_blank - out += make_option_list - out += "</select>\n" - return out end # Gets Endpoints of specific level from ontology service @@ -115,11 +108,8 @@ module OpenTox # Query string to find a registered model # @param [String] uri, model URI def self.querystring(uri) - return CGI.escape("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> - PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#> - PREFIX owl:<http://www.w3.org/2002/07/owl#> + return CGI.escape("PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX dc:<http://purl.org/dc/elements/1.1/> - PREFIX dcterms:<http://purl.org/dc/terms/> PREFIX ot:<http://www.opentox.org/api/1.1#> select distinct ?model ?title ?creator ?trainingDataset ?algorithm where { @@ -132,6 +122,5 @@ module OpenTox }") end end - end end
\ No newline at end of file |