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# set default environment
ENV['RACK_ENV'] = 'production' unless ENV['RACK_ENV']
# load/setup configuration
basedir = File.join(ENV['HOME'], ".toxbank")
config_dir = File.join(basedir, "config")
config_file = File.join(config_dir, "#{ENV['RACK_ENV']}.yaml")
TMP_DIR = File.join(basedir, "tmp")
LOG_DIR = File.join(basedir, "log")
if File.exist?(config_file)
CONFIG = YAML.load_file(config_file)
raise "could not load config, config file: "+config_file.to_s unless CONFIG
else
FileUtils.mkdir_p TMP_DIR
FileUtils.mkdir_p LOG_DIR
FileUtils.mkdir_p config_dir
puts "Please edit #{config_file} and restart your application."
#exit
end
logfile = "#{LOG_DIR}/#{ENV["RACK_ENV"]}.log"
#$logger = OTLogger.new(logfile,'daily') # daily rotation
$logger = OTLogger.new(logfile) # no rotation
$logger.formatter = Logger::Formatter.new #this is neccessary to restore the formating in case active-record is loaded
if CONFIG[:logger] and CONFIG[:logger] == "debug"
$logger.level = Logger::DEBUG
else
$logger.level = Logger::WARN
end
# Regular expressions for parsing classification data
TRUE_REGEXP = /^(true|active|1|1.0|tox|activating|carcinogen|mutagenic)$/i
FALSE_REGEXP = /^(false|inactive|0|0.0|low tox|deactivating|non-carcinogen|non-mutagenic)$/i
# OWL Namespaces
=begin
class OwlNamespace
attr_accessor :uri
def initialize(uri)
@uri = uri
end
def [](property)
@uri+property.to_s
end
def type # for RDF.type
"#{@uri}type"
end
def method_missing(property)
@uri+property.to_s
end
end
=end
AA_SERVER = CONFIG[:authorization] ? (CONFIG[:authorization][:server] ? CONFIG[:authorization][:server] : nil) : nil
CONFIG[:authorization][:authenticate_request] = [""] unless CONFIG[:authorization][:authenticate_request]
CONFIG[:authorization][:authorize_request] = [""] unless CONFIG[:authorization][:authorize_request]
CONFIG[:authorization][:free_request] = [""] unless CONFIG[:authorization][:free_request]
#RDF = OwlNamespace.new 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'
#OWL = OwlNamespace.new 'http://www.w3.org/2002/07/owl#'
#DC = OwlNamespace.new 'http://purl.org/dc/elements/1.1/'
#OT = OwlNamespace.new 'http://www.opentox.org/api/1.1#'
#OTA = OwlNamespace.new 'http://www.opentox.org/algorithmTypes.owl#'
#XSD = OwlNamespace.new 'http://www.w3.org/2001/XMLSchema#'
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