diff options
Diffstat (limited to 'test/dataset.rb')
| -rw-r--r-- | test/dataset.rb | 25 |
1 files changed, 16 insertions, 9 deletions
diff --git a/test/dataset.rb b/test/dataset.rb index 8730154..54c9871 100644 --- a/test/dataset.rb +++ b/test/dataset.rb @@ -4,23 +4,30 @@ DATASET = "http://ot-dev.in-silico.ch/dataset" DATA_DIR = File.join(File.dirname(__FILE__),"data") # TODO: add subjectids +begin + @@service_uri = $dataset[:uri] + puts "Service URI is: #{@@service_uri}" +rescue + puts "Configuration Error: $dataset[:uri] is not defined in: " + File.join(ENV["HOME"],".opentox","config","test.rb") + exit +end class DatasetTest < Test::Unit::TestCase def test_all - datasets = OpenTox::Dataset.all DATASET, @@subjectid + datasets = OpenTox::Dataset.all @@service_uri, @@subjectid assert_equal OpenTox::Dataset, datasets.first.class end def test_create_empty - d = OpenTox::Dataset.create DATASET, @@subjectid + d = OpenTox::Dataset.create @@service_uri, @@subjectid assert_equal OpenTox::Dataset, d.class - assert_match /#{DATASET}/, d.uri.to_s + assert_match /#{@@service_uri}/, d.uri.to_s d.delete :subjectid => @@subjectid end def test_create_from_file - d = OpenTox::Dataset.from_file DATASET, File.join(DATA_DIR,"EPAFHM.mini.csv"), @@subjectid + d = OpenTox::Dataset.from_file @@service_uri, File.join(DATA_DIR,"EPAFHM.mini.csv"), @@subjectid assert_equal OpenTox::Dataset, d.class assert_equal d.uri, d[RDF::XSD.anyURI] assert_equal "EPAFHM.mini", d.metadata[RDF::URI("http://purl.org/dc/elements/1.1/title")].first.to_s # DC.title is http://purl.org/dc/terms/title @@ -32,7 +39,7 @@ class DatasetTest < Test::Unit::TestCase end def test_from_yaml - @dataset = OpenTox::Dataset.from_file DATASET, File.join(DATA_DIR,"hamster_carcinogenicity.yaml"), @@subjectid + @dataset = OpenTox::Dataset.from_file @@service_uri, File.join(DATA_DIR,"hamster_carcinogenicity.yaml"), @@subjectid assert_equal OpenTox::Dataset, @dataset.class assert_equal "hamster_carcinogenicity", @dataset[RDF::URI("http://purl.org/dc/elements/1.1/title")] hamster_carc? @@ -42,7 +49,7 @@ class DatasetTest < Test::Unit::TestCase =begin # TODO: fix (mime type??0 and add Egons example def test_sdf_with_multiple_features - @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/CPDBAS_v5c_1547_29Apr2008part.sdf" + @dataset = OpenTox::Dataset.from_file @@service_uri, "#{DATA_DIR}/CPDBAS_v5c_1547_29Apr2008part.sdf" assert_equal OpenTox::Dataset, @dataset.class puts @dataset.features.size puts @dataset.compounds.size @@ -51,14 +58,14 @@ class DatasetTest < Test::Unit::TestCase =end def test_multicolumn_csv - @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/multicolumn.csv", @@subjectid + @dataset = OpenTox::Dataset.from_file @@service_uri, "#{DATA_DIR}/multicolumn.csv", @@subjectid assert_equal 5, @dataset.features.size assert_equal 4, @dataset.compounds.size @dataset.delete :subjectid => @@subjectid end def test_from_csv - @dataset = OpenTox::Dataset.from_file DATASET, "#{DATA_DIR}/hamster_carcinogenicity.csv", @@subjectid + @dataset = OpenTox::Dataset.from_file @@service_uri, "#{DATA_DIR}/hamster_carcinogenicity.csv", @@subjectid assert_equal OpenTox::Dataset, @dataset.class hamster_carc? @dataset.delete :subjectid => @@subjectid @@ -66,7 +73,7 @@ class DatasetTest < Test::Unit::TestCase =begin def test_save - d = OpenTox::Dataset.create DATASET + d = OpenTox::Dataset.create @@service_uri d.metadata d.metadata[RDF::DC.title] = "test" d.save |