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authordavor <vorgrimmlerdavid@gmx.de>2012-08-22 13:24:46 +0200
committerdavor <vorgrimmlerdavid@gmx.de>2012-08-22 13:24:46 +0200
commita546090f652c9b5b91e98de98265f11edf4656c2 (patch)
treee189d08cb823e2cb0769a6e685509dec81ef3031 /_posts/2012-08-09-install-opentox-development-environment.md
parent5be1bbe2534c2d2b89f987854b12053c0f939b29 (diff)
Rm separated 4S backends.
Diffstat (limited to '_posts/2012-08-09-install-opentox-development-environment.md')
-rw-r--r--_posts/2012-08-09-install-opentox-development-environment.md58
1 files changed, 18 insertions, 40 deletions
diff --git a/_posts/2012-08-09-install-opentox-development-environment.md b/_posts/2012-08-09-install-opentox-development-environment.md
index 04741f6..bed98ca 100644
--- a/_posts/2012-08-09-install-opentox-development-environment.md
+++ b/_posts/2012-08-09-install-opentox-development-environment.md
@@ -38,7 +38,7 @@ Conceptual approach:
# Installation
-Installation (`development` at the point of writing this = 20/08/2012) is tested with Debian 6.0.5 and should work with recent Ubuntu versions. Installer is available at [github](https://github.com/opentox/install).
+Installation (`development` at the point of writing this = 22/08/2012) is tested with Debian 6.0.5 and should work with recent Ubuntu versions. Installer is available at [github](https://github.com/opentox/install).
Before starting the installation please check if "sudo" is available (e.g. sudo ls), required for base packages.
@@ -83,6 +83,7 @@ OpenTox services(algorithm compound dataset feature task opentox-test) and tests
git clone "git@github.com:opentox/$f.git" $OT_PREFIX/$f
cd $OT_PREFIX/$f
git checkout development 2>/dev/null
+ git checkout migration 2>/dev/null
if [ -f $OT_PREFIX/$f/bin/$f-install ] then
cd $OT_PREFIX/$f/bin
./$f-install
@@ -107,54 +108,31 @@ All ot-tools (`otconfig`, `otstart`, `otcheck`, `otreload`, `otkill`) are availa
`otconfig` is the only command not taking an argument, it sets the environment variables for all services.
-Start all services and their 4store backends with:
+Start all services and the 4store backend with:
otstart all
-Kill all services and their 4store backends with:
+Kill all services and the 4store backend with:
otkill all
-It is possible to manage single services and its 4store backend(e.g. `otstart dataset` to run dataset web service).
+It is possible to manage single services (e.g. `otstart dataset` to run dataset web service).
# Access web services
-The default port setting for the web services and their 4store backends, (see config files `~/.opentox/config/\*.rb`):
-
-<table border="1">
-<tr>
-<th>Service</th>
-<th>URI</th>
-</tr>
-<tr>
-<td>Algorithm<br>Algorithm 4store backend</td>
-<td>localhost:8081/algorithm<br>localhost:9081</td>
-</tr>
-<tr>
-<td>Compound<br>Compound 4store backend</td>
-<td>localhost:8082/compound<br>localhost:9082</td>
-</tr>
-<tr>
-<td>Dataset<br>Dataset 4store backend</td>
-<td>localhost:8083/dataset<br>localhost:9083</td>
-</tr>
-<tr>
-<td>Feature<br>Feature 4store backend</td>
-<td>localhost:8084/feature<br>localhost:9084</td>
-</tr>
-<tr>
-<td>Model<br>Model 4store backend</td>
-<td>localhost:8085/model<br>localhost:9085</td>
-</tr>
-<tr>
-<td>Task<br>Task 4store backend</td>
-<td>localhost:8086/task<br>localhost:9086</td>
-</tr>
-<tr>
-<td>Validation<br>Validation 4store backend</td>
-<td>localhost:8087/validation<br>localhost:9087</td>
-</tr>
-</table>
+The default port setting for the web services and the 4store backend, (see config files `~/.opentox/config/\*.rb`):
+
+| Service | URI |
+| ------ | ------ |
+| -------------------- | ------------------------------------- |
+| Algorithm | localhost:8081/algorithm |
+| Compound | localhost:8082/compound |
+| Dataset | localhost:8083/dataset |
+| Feature | localhost:8084/feature |
+| Model | localhost:8085/model |
+| Task | localhost:8086/task |
+| Validation | localhost:8087/validation |
+| 4store | localhost:9088/ |
NOTE: Only installed service URIs are set in the config files. Model and validation service are not available yet.