diff options
Diffstat (limited to 'lib/qmrf-report.rb')
| -rw-r--r-- | lib/qmrf-report.rb | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/lib/qmrf-report.rb b/lib/qmrf-report.rb index 3ec1fdd..a83bf6d 100644 --- a/lib/qmrf-report.rb +++ b/lib/qmrf-report.rb @@ -11,6 +11,7 @@ module OpenTox # require "qsar-report" # report = OpenTox::QMRFReport.new # report.value "QSAR_title", "My QSAR Title" + # report.change_attributes "training_set_data", {:inchi => "Yes", :smiles => "Yes"} # report.change_catalog :publications_catalog, :publications_catalog_1, {:title => "MyName M (2016) My Publication Title, QSAR News, 10, 14-22", :url => "http://myqsarnewsmag.dom"} # report.ref_catalog :bibliography, :publications_catalog, :publications_catalog_1 # puts report.to_xml @@ -20,6 +21,8 @@ module OpenTox SCHEMA_FILE = File.join(File.dirname(__FILE__),"template/qmrf.xsd") # QMRF XML Template file TEMPLATE_FILE = File.join(File.dirname(__FILE__),"template/qmrf.xml") + # QMRF XML tags with attributes to edit + ATTRIBUTE_TAGS = ["training_set_availability", "training_set_data", "training_set_descriptors", "dependent_var_availability", "validation_set_availability", "validation_set_data", "validation_set_descriptors", "validation_dependent_var_availability"] attr_accessor :xml, :report @@ -55,6 +58,21 @@ module OpenTox t.content end + # Set attributes of an report XML tag + # e.G.: <training_set_data cas="Yes" chapter="6.2" chemname="Yes" formula="Yes" help="" inchi="Yes" mol="Yes" name="Available information for the training set" smiles="Yes"/> + #@example change_attributes + # report.change_attributes "training_set_data", {:inchi => "Yes", :smiles => "Yes"} + # @param [String] key Nodename e.g.: "training_set_data" + # @param [Hash] valuehash Key-Value Hash of tag attributes to change. + # @return [Error] returns Error message if fails + def change_attributes tagname, valuehash + raise "Can not edit the attributes of tag: #{tagname}." unless ATTRIBUTE_TAGS.include? tagname + tag = @report.at_css tagname + valuehash.each do |key, value| + tag.attributes["#{key}"].value = value + end + end + # Change a catalog # @param [String] catalog Name of the catalog - One of "software_catalog", "algorithms_catalog", "descriptors_catalog", "endpoints_catalog", "publications_catalog", "authors_catalog" in QMRF v1.3 # @param [String] id Single entry node in the catalog e.G.: "<software contact='mycontact@mydomain.dom' description="My QSAR Software " id="software_catalog_2" name="MySoftware" number="" url="https://mydomain.dom"/> |