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Diffstat (limited to 'service-tests/service-tests.rb')
| -rw-r--r-- | service-tests/service-tests.rb | 277 |
1 files changed, 277 insertions, 0 deletions
diff --git a/service-tests/service-tests.rb b/service-tests/service-tests.rb new file mode 100644 index 0000000..f0897af --- /dev/null +++ b/service-tests/service-tests.rb @@ -0,0 +1,277 @@ +# Make updates and copy to container +# docker cp service-tests.rb service-tests:/home/ist/service-tests/service-tests.rb +# even if container is stopped ! + +require 'minitest/autorun' +require 'rest-client' +require 'nokogiri' +require 'csv' + +class WebServiceTests < Minitest::Test + + def get_models + require '../lazar/lib/lazar.rb' + $models = OpenTox::Model::Validation.all + $r_model = $models.select{|m| m if m.model.name == "LOAEL (training_log10)"}[0].id.to_s + $c_model = $models.select{|m| m if m.model.name == "Mutagenicity (kazius)"}[0].id.to_s + end + + def test_virtuoso + puts "\nhttps://virtuoso.in-silico.ch" + assert_raises RestClient::NotFound do + response = RestClient.get "https://virtuoso.in-silico.ch" + end + end + + def test_insilico_website + puts "\nhttps://in-silico.ch" + response = RestClient.get "https://in-silico.ch" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + value = xml.at('li.active').text.strip + assert_equal "Software and services", value + end + + def test_predictive_toxicology + puts "\nhttps://predictive-toxicology.org/" + response = RestClient.get "https://predictive-toxicology.org/" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + value = xml.at('title').text + assert_equal "Predictive Toxicology", value + end + + def test_lazar_batch + puts "\nhttps://lazar-batch.in-silico.ch" + require '../batch-login.rb' + assert_raises RestClient::Unauthorized do + response = RestClient.get "https://lazar-batch.in-silico.ch" + end + assert_raises RestClient::Unauthorized do + response = RestClient::Request.execute method: :get, url: "https://lazar-batch.in-silico.ch", user: $user+"f", password: $passwd + end + assert_raises RestClient::Unauthorized do + response = RestClient::Request.execute method: :get, url: "https://lazar-batch.in-silico.ch", user: $user, password: $passwd+"f" + end + response = RestClient::Request.execute method: :get, url: "https://lazar-batch.in-silico.ch", user: $user, password: $passwd + xml = Nokogiri::HTML.parse(response.body) + assert_match xml.at('h1').text.gsub(/\n/,"").strip, "lazar toxicity predictions" + # batch + get_models + response = RestClient::Request.execute method: :post, + url: "https://lazar-batch.in-silico.ch/predict", + user: $user, + password: $passwd, + payload: { + multipart: true, + fileselect: File.new('./test.csv', 'rb'), + selection: {$r_model => ""} + } + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + value = xml.css('h5').text + assert_equal "Lowest observed adverse effect level (LOAEL) (Rat)", value + value = xml.at_css('a#detailsbutton_0').text.strip + assert_equal "Details", value + end + + def test_dump + puts "\nhttps://dump.in-silico.ch" + response = RestClient.get "https://dump.in-silico.ch" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + dumpsize = xml.at('pre').text.split.last.to_i + response = RestClient.get "https://dump.in-silico.ch/dump.tar.gz" + assert_equal response.body.size.to_i, dumpsize + end + + def test_lazar + puts "\nhttps://lazar.in-silico.ch" + get_models + response = RestClient.get "https://lazar.in-silico.ch" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + assert_match xml.at('h1').text.gsub(/\n/,"").strip, "lazar toxicity predictions" + puts "\npredict regression: https://lazar.in-silico.ch/predict" + # regression + response = RestClient.post "https://lazar.in-silico.ch/predict", {identifier: "O=[N+]([O-])c1ccccc1", selection: {$r_model=>""}} + xml = Nokogiri::HTML.parse(response.body) + value = xml.css('td')[1].css('p')[2].text.split[1].to_f + assert value.between?(0.06,0.09) + puts "\npredict classification: https://lazar.in-silico.ch/predict" + # classification + response = RestClient.post "https://lazar.in-silico.ch/predict", {identifier: "O=[N+]([O-])c1ccccc1", selection: {$c_model=>""}} + xml = Nokogiri::HTML.parse(response.body) + value = xml.css('td')[1].css('p')[4].text.split.last + assert_equal "mutagenic", value + # regression + puts "\nmodel details regression: https://lazar.in-silico.ch/predict/modeldetails/#{$r_model}" + response = RestClient.get "https://lazar.in-silico.ch/predict/modeldetails/#{$r_model}" + xml = Nokogiri::HTML.parse(response.body) + puts "check metadata\n" + links = xml.css('a') + assert_equal "https://github.com/opentox/loael-paper/blob/revision/data/training_log10.csv", links[0].children.text.strip + assert_equal "training_log10", links[1].children.text.strip + assert_equal "Algorithm::Similarity.tanimoto", links[2].children.text.strip + assert_equal "Algorithm::Caret.rf", links[3].children.text.strip + text = xml.css('div.panel-body')[0] + a,b = text.children[4].text.strip.split("\n") + assert_equal "Type:", a.strip + assert_equal "Regression", b.strip + a,b = text.children[6].text.strip.split("\n") + assert_equal "Training compounds:", a.strip + assert_equal "671", b.strip + text = xml.css('div.panel-body')[1] + a,b,c = text.children[8].text.strip.split + assert_equal "Descriptors:", a.strip + assert_equal "fingerprint,", b.strip + assert_equal "MP2D", c.strip + # classification + puts "\nmodel details classification: https://lazar.in-silico.ch/predict/modeldetails/#{$c_model}" + response = RestClient.get "https://lazar.in-silico.ch/predict/modeldetails/#{$c_model}" + xml = Nokogiri::HTML.parse(response.body) + puts "check metadata\n" + links = xml.css('a') + assert_equal "http://cheminformatics.org/datasets/", links[0].children.text.strip + assert_equal "kazius", links[1].children.text.strip + assert_equal "Algorithm::Similarity.tanimoto", links[2].children.text.strip + assert_equal "Algorithm::Classification.weighted_majority_vote", links[3].children.text.strip + text = xml.css('div.panel-body')[0] + a,b = text.children[4].text.strip.split("\n") + assert_equal "Type:", a.strip + assert_equal "Classification", b.strip + a,b = text.children[6].text.strip.split("\n") + assert_equal "Training compounds:", a.strip + assert_equal "4069", b.strip + text = xml.css('div.panel-body')[1] + a,b,c = text.children[8].text.strip.split + assert_equal "Descriptors:", a.strip + assert_equal "fingerprint,", b.strip + assert_equal "MP2D", c.strip + end + + def test_nano_lazar + puts "\nhttps://nano-lazar.in-silico.ch" + response = RestClient.get "https://nano-lazar.in-silico.ch" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + assert_match xml.at('h1').text.gsub(/\n/,"").strip, "nano-lazar toxicity predictions" + + params = {example_coating_0: "N-(2-Mercaptopropionyl)glycine", + example_core: "Au", + example_id: "5878a6097b6c9b003a862710", + example_pc: "{}", + input_coating_0: "N-(2-Mercaptopropionyl)glycine", + input_core: "Au", + prediction_model: "5878aa1d7b6c9b003a8629b1", + type: "fingerprint" + } + puts "\npredict example: https://nano-lazar.in-silico.ch/predict" + response = RestClient.post "https://nano-lazar.in-silico.ch/predict", params + xml = Nokogiri::HTML.parse(response.body) + value = xml.css('tbody').css('tr')[1].css('td')[0].css('a').text.gsub(/\n/,"").strip + assert_equal value, "G15.AC" + end + + def test_aop + puts "\nhttps://aop.in-silico.ch" + response = RestClient.get "https://aop.in-silico.ch" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + assert_match xml.at('h1').text.gsub(/\n/,"").strip, "PubChem read across" + puts "\nhttps://aop.in-silico.ch/cid/31703" + response = RestClient.get "https://aop.in-silico.ch/cid/31703" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + value = xml.at('th').text.split.first.strip + assert_equal "(7S,9S)-7-[(2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyloxan-2-yl]oxy-6,9,11-trihydroxy-9-(2-hydroxyacetyl)-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dione", value + end + + def test_dg2_Elena + puts "\nhttps://dg2.in-silico.ch" + response = RestClient.get "https://dg2.in-silico.ch" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + batch_file_id = xml.search("label")[4].attributes["for"].value.gsub(/existing|\[|\]/,"") + batch_file_name = xml.search("label")[4].text.strip + assert_match xml.at('h1').text.gsub(/\n/,"").strip, "lazar toxicity predictions" + puts "\nsingle prediction Mazzatorta: https://dg2.in-silico.ch/predict" + response = RestClient.post "https://dg2.in-silico.ch/predict", {identifier: "O=[N+]([O-])c1ccccc1", selection: {"Mazzatorta"=>""}} + xml = Nokogiri::HTML.parse(response.body) + value = xml.css('td')[1].css('p')[0].text.split[1].to_f + assert value, 0.384 + puts "\nsingle prediction lazar LOAEL: https://dg2.in-silico.ch/predict" + response = RestClient.post "https://dg2.in-silico.ch/predict", {identifier: "O=[N+]([O-])c1ccccc1", selection: {"5ba4e38b5e110b01688fa0ca"=>""}} + xml = Nokogiri::HTML.parse(response.body) + value = xml.css('td')[1].css('p')[2].text.split[1].to_f + assert value, 0.0807 + + puts "\nbatch prediction with first dataset in existing list\n" + response = RestClient.post "https://dg2.in-silico.ch/predict", {existing: {batch_file_id=>""}, selection: {"5ba4e38b5e110b01688fa0ca"=>""}} + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + title = xml.search("h3").text + assert_equal title, "Batch Prediction Results:RHC_input" + sleep 3 + href = xml.search("a#downbutton_0")[0]["href"] + puts "\ndownload csv batch results\n" + response = RestClient.get href + csv = CSV.new(response.body) + header = csv.first + ["ID", "Original ID", "Input", "Endpoint"].each do |h| + assert_includes header, h + end + + puts "\nmodel details lazar LOAEL: https://dg2.in-silico.ch/predict/modeldetails/5ba4e38b5e110b01688fa0ca" + response = RestClient.get "https://dg2.in-silico.ch/predict/modeldetails/5ba4e38b5e110b01688fa0ca" + xml = Nokogiri::HTML.parse(response.body) + puts "check metadata\n" + links = xml.css('a') + assert_equal "https://github.com/opentox/loael-paper/blob/revision/data/training_log10.csv", links[0].children.text.strip + assert_equal "training_log10", links[1].children.text.strip + assert_equal "Algorithm::Similarity.tanimoto", links[2].children.text.strip + assert_equal "Algorithm::Caret.rf", links[3].children.text.strip + text = xml.css('div.panel-body')[0] + a,b = text.children[4].text.strip.split("\n") + assert_equal "Type:", a.strip + assert_equal "Regression", b.strip + a,b = text.children[6].text.strip.split("\n") + assert_equal "Training compounds:", a.strip + assert_equal "671", b.strip + text = xml.css('div.panel-body')[1] + a,b,c = text.children[8].text.strip.split + assert_equal "Descriptors:", a.strip + assert_equal "fingerprint,", b.strip + assert_equal "MP2D", c.strip + end + + def test_dg3_Elena + puts "\nhttps://dg3.in-silico.ch" + response = RestClient.get "https://dg3.in-silico.ch" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + assert_match xml.at('h1').text.gsub(/\n/,"").strip, "lazar toxicity predictions" + end + + def test_test1_Elena + puts "\nhttps://test1.in-silico.ch" + response = RestClient.get "https://test1.in-silico.ch" + assert_equal response.code, 200 + xml = Nokogiri::HTML.parse(response.body) + assert_match xml.at('h1').text.gsub(/\n/,"").strip, "Nestec Toxicity Predictions" + end + + #def test_git_server + #TODO Net::HTTPBadResponse: wrong status line: "SSH-2.0-OpenSSH_7.8" + # response = RestClient.get "https://git.in-silico.ch" + #end + + def test_server_invalid_cert + puts "\ninvalid cert test4" + assert_raises RestClient::SSLCertificateNotVerified do + response = RestClient.get "https://test4.in-silico.ch" + end + end + +end + 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