Initial sketch of unit tests, cucumber tests are obsolete

1 files changed, 44 insertions, 0 deletions

diff --git a/algorithm.rb b/algorithm.rb
new file mode 100644
index 0000000..a3eaa91
--- /dev/null
+++ b/algorithm.rb
@@ -0,0 +1,44 @@
+require 'rubygems'
+require 'opentox-ruby-api-wrapper'
+require 'test/unit'
+require "./validate-owl.rb"
+
+class AlgorithmTest < Test::Unit::TestCase
+
+  def setup
+    @algorithms = [
+      "http://localhost/algorithm/fminer/bbrc",
+      "http://localhost/algorithm/fminer/last",
+      "http://localhost/algorithm/lazar",
+      #"http://apps.ideaconsult.net:8080/ambit2/algorithm/J48",
+    ]
+  end
+
+  def teardown
+  end
+
+=begin
+  def test_metadata
+    @algorithms.each do |algorithm|
+      puts algorithm
+      validate_owl(algorithm)
+    end
+  end
+=end
+
+  def test_run_external
+    {
+      #"http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/J48" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/10", :prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/21595"},
+      #"http://apps.ideaconsult.net:8080/ambit2/algorithm/toxtreeskinirritation" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" }, # TASK redirects to model
+      "http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/CDKPhysChem" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" },
+      #"http://apps.ideaconsult.net:8080/ambit2/algorithm/org.openscience.cdk.qsar.descriptors.molecular.ALOGPDescriptor" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" }
+      #"http://opentox.ntua.gr:3000/algorithm/svm"
+    }.each do |uri,params|
+      algorithm = OpenTox::Algorithm::Generic.new uri
+      dataset_uri = algorithm.run(params)
+      dataset = OpenTox::Dataset.find dataset_uri
+      puts dataset.to_yaml
+    end
+  end
+
+end