diff options
| author | Christoph Helma <helma@in-silico.ch> | 2011-03-10 10:28:20 +0100 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2011-03-10 10:28:20 +0100 |
| commit | 2043f901e5f7abdac030f4aae8bbcb2d8d38476c (patch) | |
| tree | 720fa04978da527c64a2e7901dafe506583bc9ce /lazar.rb | |
| parent | 182f3e9f34026934626ceff42902274f2e6f046c (diff) | |
| parent | a851e4794630fbae3b6b3bf228b43f550f61febb (diff) | |
dataset tests fixed
Diffstat (limited to 'lazar.rb')
| -rw-r--r-- | lazar.rb | 12 |
1 files changed, 6 insertions, 6 deletions
@@ -15,7 +15,7 @@ class LazarTest < Test::Unit::TestCase def test_create_regression_model model_uri = OpenTox::Algorithm::Lazar.new.run({:dataset_uri => @@regression_training_dataset.uri, :subjectid => @@subjectid}).to_s lazar = OpenTox::Model::Lazar.find model_uri, @@subjectid - assert_equal lazar.features.size, 222 + assert_equal 225, lazar.features.size compound = OpenTox::Compound.from_smiles("c1ccccc1NN") #puts lazar.uri #puts compound.inspect @@ -24,8 +24,8 @@ class LazarTest < Test::Unit::TestCase prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid) #puts prediction_uri prediction = OpenTox::LazarPrediction.find(prediction_uri, @@subjectid) - assert_equal prediction.value(compound).round_to(4), 0.149518871336721.round_to(4) - assert_equal prediction.confidence(compound).round_to(4), 0.615246530364447.round_to(4) + assert_equal prediction.value(compound).round_to(4), 0.1618.round_to(4) + assert_equal prediction.confidence(compound).round_to(4), 0.6114.round_to(4) assert_equal prediction.neighbors(compound).size, 81 prediction.delete(@@subjectid) lazar.delete(@@subjectid) @@ -39,11 +39,12 @@ class LazarTest < Test::Unit::TestCase # single prediction compound = OpenTox::Compound.from_smiles("c1ccccc1NN") - #puts compound.uri prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid) + #puts prediction_uri prediction = OpenTox::LazarPrediction.find(prediction_uri, @@subjectid) + puts prediction.inspect assert_equal prediction.value(compound), false - assert_equal prediction.confidence(compound).round_to(4), 0.25857114104619.round_to(4) + assert_equal prediction.confidence(compound).round_to(4), 0.3005.round_to(4) assert_equal prediction.neighbors(compound).size, 15 prediction.delete(@@subjectid) # dataset activity @@ -62,7 +63,6 @@ class LazarTest < Test::Unit::TestCase compound = OpenTox::Compound.new prediction.compounds.first #puts "compound" #puts compound.inspect - #puts "prediction" #puts prediction.value(compound).inspect assert_equal prediction.value(compound), false prediction.delete(@@subjectid) |