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authorChristoph Helma <helma@in-silico.ch>2011-01-28 18:11:15 +0100
committerChristoph Helma <helma@in-silico.ch>2011-01-28 18:11:15 +0100
commit545f4f9e511d8e39a808a1c24de37eb33d2f026e (patch)
tree7b61495456fe22356e1a8a8e85e3e774878d5af2 /lazar.rb
parent5f0d5b9ffa13f54b52fa0a41dd2d7f2ab55978f5 (diff)
auth added
Diffstat (limited to 'lazar.rb')
-rw-r--r--lazar.rb14
1 files changed, 9 insertions, 5 deletions
diff --git a/lazar.rb b/lazar.rb
index 280f917..a1ab6db 100644
--- a/lazar.rb
+++ b/lazar.rb
@@ -31,8 +31,10 @@ class LazarTest < Test::Unit::TestCase
model_uri = OpenTox::Algorithm::Lazar.new.run({:dataset_uri => @@classification_training_dataset.uri, :subjectid => @@subjectid}).to_s
lazar = OpenTox::Model::Lazar.find model_uri, @@subjectid
assert_equal lazar.features.size, 41
+
# single prediction
compound = OpenTox::Compound.from_smiles("c1ccccc1NN")
+ #puts compound.uri
prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid)
prediction = OpenTox::LazarPrediction.find(prediction_uri, @@subjectid)
assert_equal prediction.value(compound), false
@@ -44,7 +46,7 @@ class LazarTest < Test::Unit::TestCase
prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid)
prediction = OpenTox::LazarPrediction.find prediction_uri, @@subjectid
assert !prediction.measured_activities(compound).empty?
- puts prediction.measured_activities(compound).first.inspect
+ #puts prediction.measured_activities(compound).first.inspect
assert_equal prediction.measured_activities(compound).first, true
assert prediction.value(compound).nil?
prediction.delete(@@subjectid)
@@ -53,13 +55,15 @@ class LazarTest < Test::Unit::TestCase
prediction = OpenTox::LazarPrediction.find lazar.run(:dataset_uri => test_dataset.uri, :subjectid => @@subjectid), @@subjectid
assert_equal prediction.compounds.size, 4
compound = OpenTox::Compound.new prediction.compounds.first
- puts "compound"
- puts compound.inspect
- puts "prediction"
- puts prediction.value(compound).inspect
+ #puts "compound"
+ #puts compound.inspect
+ #puts "prediction"
+ #puts prediction.value(compound).inspect
assert_equal prediction.value(compound), false
prediction.delete(@@subjectid)
lazar.delete(@@subjectid)
+=begin
+=end
end
end