diff options
Diffstat (limited to 'dataset.rb')
| -rw-r--r-- | dataset.rb | 16 |
1 files changed, 16 insertions, 0 deletions
@@ -6,6 +6,7 @@ require 'validate-owl' class DatasetTest < Test::Unit::TestCase def setup + @@subjectid = nil @datasets = { @@regression_training_dataset.uri => nil, @@classification_training_dataset.uri => { @@ -64,6 +65,11 @@ class DatasetTest < Test::Unit::TestCase hamster_carc? end + def test_sdf_with_multiple_features + uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], File.read("data/CPDBAS_v5c_1547_29Apr2008part.sdf") ,{:accept => "text/uri-list",:content_type => "chemical/x-mdl-sdfile", :subjectid => @@subjectid}).to_s.chomp + assert_kind_of URI::HTTP, URI.parse(uri) + end + def test_rest_csv uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], {:file => File.new("data/hamster_carcinogenicity.csv")} ,{:accept => "text/uri-list", :subjectid => @@subjectid}).to_s.chomp @dataset = OpenTox::Dataset.new uri, @@subjectid @@ -137,6 +143,16 @@ class DatasetTest < Test::Unit::TestCase end end + def test_sdf + @datasets.each do |uri,data| + @dataset = OpenTox::Dataset.new(uri) + @dataset.load_all @@subjectid + sdf = @dataset.to_sdf + size = sdf.lines.to_a.select{|i| i == "$$$$\n"}.size + assert_equal size, data[:nr_compounds] if data + end + end + def test_csv @datasets.each do |uri,data| @dataset = OpenTox::Dataset.new(uri) |