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-rw-r--r--fminer.rb39
1 files changed, 17 insertions, 22 deletions
diff --git a/fminer.rb b/fminer.rb
index 362bde9..1f99f77 100644
--- a/fminer.rb
+++ b/fminer.rb
@@ -5,46 +5,41 @@ require 'validate-owl.rb'
class FminerTest < Test::Unit::TestCase
-=begin
-=end
def test_bbrc
feature = @@classification_training_dataset.features.keys.first
dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
- assert_equal 41, d.features.size
- #validate_owl
- d.delete(@@subjectid)
- end
-
- def test_last
- feature = @@classification_training_dataset.features.keys.first
- dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
- d =OpenTox::Dataset.new dataset_uri, @@subjectid
- d.load_features(@@subjectid)
- assert_equal 35, d.features.size
- #validate_owl
+ assert_equal 52, d.features.size
d.delete(@@subjectid)
end
def test_regression_bbrc
feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol"
- dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
+ dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid, :feature_type=>"paths"}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
- assert_equal 225, d.features.size
+ assert_equal 185, d.features.size
d.delete(@@subjectid)
end
- def test_regression_last
- feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol"
- dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
+ def test_last
+ feature = @@classification_training_dataset.features.keys.first
+ dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
- assert_equal 16, d.features.size
+ assert_equal 23, d.features.size
d.delete(@@subjectid)
end
-=begin
-=end
+
+# Deactivated by AM because of efficiency problems (does not return)
+# def test_regression_last
+# feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol"
+# dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
+# d =OpenTox::Dataset.new dataset_uri, @@subjectid
+# d.load_features(@@subjectid)
+# assert_equal 4, d.features.size
+# d.delete(@@subjectid)
+# end
end