diff options
Diffstat (limited to 'toxcreate.rb')
| -rw-r--r-- | toxcreate.rb | 178 |
1 files changed, 127 insertions, 51 deletions
diff --git a/toxcreate.rb b/toxcreate.rb index 8287140..de9ab59 100644 --- a/toxcreate.rb +++ b/toxcreate.rb @@ -4,26 +4,26 @@ require 'opentox-ruby' require 'test/unit' require 'akephalos' require 'capybara/dsl' -Capybara.default_driver = :akephalos +Capybara.default_driver = :akephalos # use this without visual inspection #Capybara.default_driver = :selenium # use this for visual inspection Capybara.run_server = false -Capybara.default_wait_time = 600 - +Capybara.default_wait_time = 1000 +#Capybara.javascript_driver = :selenium class ToxCreateTest < Test::Unit::TestCase include Capybara def setup - @user = "test_ch" - @password = "test_ch" + @user = "guest" + @password = "guest" end def teardown end =begin - def test_login + def test_01_login visit File.join(CONFIG[:services]["opentox-toxcreate"], "login") click_on "Login" puts "Login without credentials" @@ -42,76 +42,150 @@ class ToxCreateTest < Test::Unit::TestCase puts "Login as user guest" assert page.has_content? "Welcome guest!" end - - - def test_predict # works only with selenium - visit CONFIG[:services]["opentox-toxcreate"] - click_on "Predict" - fill_in "or enter a Name, InChI, Smiles, CAS, ...", :with => "NNc1ccccc1" - check "hamster_carcinogenicity" - click_button "Predict" - assert page.has_content? "false" - assert page.has_content? "0.294" - click_on "Details" - assert page.has_content? "0.875" - end =end - - def test_toxcreate # works only with akephalos + def test_02_toxcreate # works only with akephalos + Capybara.current_driver = :akephalos #login(@browser, @user, @password) visit CONFIG[:services]["opentox-toxcreate"] assert page.has_content?('Upload training data') - attach_file('file', "./data/hamster_carcinogenicity.csv") + attach_file('file', "./data/hamster_carcinogenicity.mini.csv") click_on "Create model" - assert first("h2").has_content? 'hamster_carcinogenicity' + assert first("h2").has_content? "hamster_carcinogenicity" time = 0 - while first(".model_status").has_no_content?("Completed") and time < 120 do + while (first(".model_status").has_no_content?("Completed") and first(".model_status").has_no_content?("Error")) do sleep 5 time +=5 end assert first(".model_status").has_content?("Completed") - click_on "Predict" - fill_in "or enter a Name, InChI, Smiles, CAS, ...", :with => "NNc1ccccc1" - check "hamster_carcinogenicity" - #click_button "Predict" + end + + def test_03_predict + Capybara.register_driver :akephalos do |app| + Capybara::Driver::Akephalos.new(app, :validate_scripts => false) + end + session = Capybara::Session.new(:akephalos) + session.visit CONFIG[:services]["opentox-toxcreate"] + session.click_on "Predict" + session.fill_in "or enter a Name, InChI, Smiles, CAS, ...", :with => "NNc1ccccc1" + session.check "hamster_carcinogenicity" + session.click_button "Predict" + assert session.has_content? "inactive" + session.click_on "Confidence" + assert session.has_content? "Indicates the applicability domain of a model" + session.click_on "Details" + #assert page.has_content? "false" - #assert page.has_content? "0.294" - #click_on "Details" + #assert page.has_content? "0.294" #assert page.has_content? "0.875" end - =begin - def test_multi_cell_call - login(@browser, @user, @password) - @browser.goto CONFIG[:services]["opentox-toxcreate"] - @browser.file_field(:id, "file").set(`pwd`.chomp+"/data/multi_cell_call.csv") - @browser.button(:value, "Create model").click - # wait until validation is completed - # check results (links, reports, results) - puts @browser.url + def test_04_inspect_policies + Capybara.current_driver = :selenium + visit CONFIG[:services]["opentox-toxcreate"] + click_on "Inspect" + assert first('h2').has_content? 'hamster_carcinogenicity' + click_on "edit" + click_on "manage policy" + within(:xpath, '//form[contains(@id, "form_policy_group_member_")]') do + find(:xpath, './/input[5]').click + click_on "update" + end + sleep 5 + end + + def test_05_inspect_policies + Capybara.current_driver = :selenium + visit CONFIG[:services]["opentox-toxcreate"] + click_on "Inspect" + assert first('h2').has_content? 'hamster_carcinogenicity' + click_on "edit" + click_on "manage policy" + + within(:xpath, '//form[contains(@id, "form_policy_group_member_")]') do + find(:xpath, './/input[4]').click + click_on "update" + end + sleep 5 + end + + def test_06_inspect_policies + Capybara.current_driver = :selenium + visit CONFIG[:services]["opentox-toxcreate"] + click_on "Inspect" + assert first('h2').has_content? 'hamster_carcinogenicity' + click_on "edit" + click_on "manage policy" + within(:xpath, '//form[contains(@id, "form_development")]') do + find(:xpath, './/input[4]').click + click_on "add" + end + sleep 5 + end + + def test_07_inspect_policies + Capybara.current_driver = :selenium + visit CONFIG[:services]["opentox-toxcreate"] + click_on "Inspect" + assert first('h2').has_content? 'hamster_carcinogenicity' + click_on "edit" + click_on "manage policy" + within(:xpath, '//form[contains(@id, "form_policy_group_development_")]') do + find(:xpath, './/input[3]').click + click_on "update" + end + sleep 5 + page.evaluate_script('window.confirm = function() { return true; }') + click_on "delete" + end + +=begin + def test_08_multi_cell_call + #login(@browser, @user, @password) + Capybara.current_driver = :akephalos + visit CONFIG[:services]["opentox-toxcreate"] + assert page.has_content?('Upload training data') + attach_file('file', "./data/multi_cell_call.csv") + click_on "Create model" end - def test_kazius - login(@browser, @user, @password) - @browser.goto CONFIG[:services]["opentox-toxcreate"] - @browser.file_field(:id, "file").set(`pwd`.chomp+"/data/kazius.csv") - @browser.button(:value, "Create model").click + def test_09_kazius + Capybara.current_driver = :akephalos + #login(@browser, @user, @password) + visit CONFIG[:services]["opentox-toxcreate"] + assert page.has_content?('Upload training data') + attach_file('file', "./data/kazius.csv") # wait until validation is completed # check results (links, reports, results) puts @browser.url end - def test_parallel_models - login(@browser, @user, @password) + def test_10_parallel_models + #login(@browser, @user, @password) 10.times do - @browser.goto CONFIG[:services]["opentox-toxcreate"] - @browser.file_field(:id, "file").set(`pwd`.chomp+"/data/hamster_carcinogenicity.csv") - @browser.button(:value, "Create model").click + visit CONFIG[:services]["opentox-toxcreate"] + assert page.has_content?('Upload training data') + attach_file('file', "./data/multi_cell_call.csv") + click_on "Create model" + end + end + # raises capybara errors, but gui works from browser + def test_11_toxcreate_sdf # works only with akephalos + Capybara.current_driver = :akephalos + #login(@browser, @user, @password) + visit CONFIG[:services]["opentox-toxcreate"] + assert page.has_content?('Upload training data') + attach_file('file', "./data/hamster_carcinogenicity.sdf") + click_on "Create model" + assert first("h2").has_content? "hamster_carcinogenicity" + time = 0 + while first(".model_status").has_no_content?("Completed") do + sleep 5 + time +=5 end - #@browser.close + assert first(".model_status").has_content?("Completed") end =end -end + =begin def login(browser, user, password) @@ -120,4 +194,6 @@ def login(browser, user, password) browser.text_field(:id, "password").set(password) browser.button(:value, "Login").click end + =end +end |