diff options
Diffstat (limited to 'toxcreate.rb')
| -rw-r--r-- | toxcreate.rb | 198 |
1 files changed, 78 insertions, 120 deletions
diff --git a/toxcreate.rb b/toxcreate.rb index 9b40e0e..14e61c4 100644 --- a/toxcreate.rb +++ b/toxcreate.rb @@ -4,12 +4,14 @@ require 'opentox-ruby' require 'test/unit' require 'akephalos' require 'capybara/dsl' +gem 'capybara-envjs' +require 'capybara/envjs' # gem install capybara-envjs +# requires firefox 3.6 for akephalos and selenium !!! Capybara.default_driver = :akephalos # use this without visual inspection #Capybara.default_driver = :selenium # use this for visual inspection Capybara.run_server = false Capybara.default_wait_time = 1000 -#Capybara.javascript_driver = :selenium - +Capybara.javascript_driver = :envjs class ToxCreateTest < Test::Unit::TestCase include Capybara @@ -18,37 +20,38 @@ class ToxCreateTest < Test::Unit::TestCase @user = "guest" @password = "guest" end - - def teardown - end - -=begin +=begin # works only with AA enabled def test_01_login visit File.join(CONFIG[:services]["opentox-toxcreate"], "login") - click_button "Login" - puts "Login without credentials" - assert page.has_content?("Please enter username and password.") + assert page.has_content?('User: guest') fill_in('Username', :with => @user) fill_in('Password', :with => @password + "nonsense") - click_button "Login" - puts "Login with wrong password" - assert page.has_content?('Login failed. Please try again.') - fill_in('Username', :with => "anonymous") - fill_in('Password', :with => "anonymous") - click_button "Login" - assert page.has_content?("Welcome anonymous!") + click_button('Login') + assert page.has_content? "Login failed. Please try again." + fill_in('Username', :with => @user) + fill_in('Password', :with => @password) + click_button('Login') + assert page.has_content? "Welcome #{@user}!" visit File.join(CONFIG[:services]["opentox-toxcreate"], "login") - click_button "Login as guest" - puts "Login as user guest" - assert page.has_content?("Welcome guest!") + assert page.has_content?('User: guest') + fill_in('Username', :with => @user) + fill_in('Password', :with => @password + "nonsense") + click_button('Login') + assert page.has_content? "Login failed. Please try again." + click_button('Login as guest') + assert page.has_content? "Welcome #{@user}!" end - +=end def test_02_toxcreate # works only with akephalos + # create a model and check status is complete Capybara.current_driver = :akephalos - #login(@browser, @user, @password) - visit CONFIG[:services]["opentox-toxcreate"] + visit File.join(CONFIG[:services]["opentox-toxcreate"], "create") assert page.has_content?('Upload training data') - attach_file('file', "./data/hamster_carcinogenicity.mini.csv") + attach_file('file', "./data/hamster_carcinogenicity.csv") + assert page.has_button?('endpoint_list_button') + click_on "Select endpoint" + choose('EcotoxicEffects') + choose('Acute_toxicity_to_fish_lethality') click_on "Create model" assert first("h2").has_content? "hamster_carcinogenicity" time = 0 @@ -57,119 +60,84 @@ class ToxCreateTest < Test::Unit::TestCase time +=5 end assert first(".model_status").has_content?("Completed") + sleep 5 end -=end + def test_03_predict + # predict with the model from test_02 Capybara.register_driver :akephalos do |app| Capybara::Driver::Akephalos.new(app, :validate_scripts => false) + visit File.join(CONFIG[:services]["opentox-toxcreate"], "predict") + fill_in 'identifier', :with => 'NNc1ccccc1' + find(:xpath, '//form/fieldset[2]/input[contains(@name, "select")]').click + click_button("Predict") + click_button("Details") + page.has_content? "false" + page.has_content? "0.294" + page.has_content? "0.875" + page.has_content? "next" end - session = Capybara::Session.new(:akephalos) - session.visit CONFIG[:services]["opentox-toxcreate"] - session.click_on "Predict" - session.fill_in "or enter a Smiles string", :with => "NNc1ccccc1" - session.check "hamster carcinogenicity" - session.click_button "Predict" - assert session.has_content?("Not enough similar compounds in training dataset") - session.click_on "Confidence" - assert session.has_content?("Indicates the applicability domain of a model") - session.click_button "Details" - - #assert page.has_content? "false" - #assert page.has_content? "0.294" - #assert page.has_content? "0.875" - end -=begin - def test_04_inspect_policies - Capybara.current_driver = :selenium - visit CONFIG[:services]["opentox-toxcreate"] - click_on "Inspect" - assert first('h2').has_content? 'hamster_carcinogenicity' - click_on "edit" - click_on "manage policy" - within(:xpath, '//form[contains(@id, "form_policy_group_member_")]') do - find(:xpath, './/input[5]').click - click_on "update" - end - sleep 5 - end - - def test_05_inspect_policies - Capybara.current_driver = :selenium - visit CONFIG[:services]["opentox-toxcreate"] - click_on "Inspect" - assert first('h2').has_content? 'hamster_carcinogenicity' - click_on "edit" - click_on "manage policy" - - within(:xpath, '//form[contains(@id, "form_policy_group_member_")]') do - find(:xpath, './/input[4]').click - click_on "update" - end - sleep 5 - end - - def test_06_inspect_policies - Capybara.current_driver = :selenium - visit CONFIG[:services]["opentox-toxcreate"] - click_on "Inspect" - assert first('h2').has_content? 'hamster_carcinogenicity' - click_on "edit" - click_on "manage policy" - within(:xpath, '//form[contains(@id, "form_development")]') do - find(:xpath, './/input[4]').click - click_on "add" - end - sleep 5 end - - def test_07_inspect_policies - Capybara.current_driver = :selenium - visit CONFIG[:services]["opentox-toxcreate"] - click_on "Inspect" - assert first('h2').has_content? 'hamster_carcinogenicity' - click_on "edit" - click_on "manage policy" - within(:xpath, '//form[contains(@id, "form_policy_group_development_")]') do - find(:xpath, './/input[3]').click - click_on "update" - end + + def test_04_delete_model + # delete the model from test_02 + visit File.join(CONFIG[:services]["opentox-toxcreate"], "models") + assert (first(".model_status").has_content?("Completed") or first(".model_status").has_content?("Error")) + click_on "delete" + page.evaluate_script('window.confirm = function() { return true; }') sleep 5 - page.evaluate_script('window.confirm = function() { return true; }') - click_on "delete" end - =begin - def test_08_multi_cell_call + def test_09_multi_cell_call #login(@browser, @user, @password) - Capybara.current_driver = :akephalos - visit CONFIG[:services]["opentox-toxcreate"] + #Capybara.current_driver = :akephalos + visit File.join(CONFIG[:services]["opentox-toxcreate"], "create") assert page.has_content?('Upload training data') attach_file('file', "./data/multi_cell_call.csv") click_on "Create model" end - def test_09_kazius - Capybara.current_driver = :akephalos + def test_10_kazius + #Capybara.current_driver = :akephalos #login(@browser, @user, @password) - visit CONFIG[:services]["opentox-toxcreate"] + visit File.join(CONFIG[:services]["opentox-toxcreate"], "create") assert page.has_content?('Upload training data') attach_file('file', "./data/kazius.csv") # wait until validation is completed # check results (links, reports, results) puts @browser.url end - - def test_10_parallel_models - #login(@browser, @user, @password) - 10.times do - visit CONFIG[:services]["opentox-toxcreate"] + + def test_11_parallel_models + 5.times do + visit File.join(CONFIG[:services]["opentox-toxcreate"], "create") assert page.has_content?('Upload training data') - attach_file('file', "./data/multi_cell_call.csv") + attach_file('file', "./data/hamster_carcinogenicity.csv") click_on "Create model" end + while (first(".model_status").has_no_content?("Completed") and first(".model_status").has_no_content?("Error")) do + sleep 1 + end + assert first(".model_status").has_content?("Completed") + end + + def test_12_delete_parallel_models + 5.times do + visit File.join(CONFIG[:services]["opentox-toxcreate"], "models") + click_on "delete" + page.evaluate_script('window.confirm = function() { return true; }') + #sleep 5 + end + sleep 5 + visit File.join(CONFIG[:services]["opentox-toxcreate"], "models") + while page.has_no_content? "There are currently no models" do + sleep 1 + end + assert page.has_content? "There are currently no models" end +=begin # raises capybara errors, but gui works from browser - def test_11_toxcreate_sdf # works only with akephalos + def test_12_toxcreate_sdf # works only with akephalos Capybara.current_driver = :akephalos #login(@browser, @user, @password) visit CONFIG[:services]["opentox-toxcreate"] @@ -186,14 +154,4 @@ class ToxCreateTest < Test::Unit::TestCase end =end - -=begin -def login(browser, user, password) - browser.goto File.join(CONFIG[:services]["opentox-toxcreate"], "login") - browser.text_field(:id, "username").set(user) - browser.text_field(:id, "password").set(password) - browser.button(:value, "Login").click -end - -=end end |