diff options
Diffstat (limited to 'validation.rb')
-rw-r--r-- | validation.rb | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/validation.rb b/validation.rb new file mode 100644 index 0000000..beb1c02 --- /dev/null +++ b/validation.rb @@ -0,0 +1,45 @@ +require 'rubygems' +require 'opentox-ruby' +require 'test/unit' + +class Float + def round_to(x) + (self * 10**x).round.to_f / 10**x + end +end + +class ValidationTest < Test::Unit::TestCase + +=begin +=end + def test_crossvalidation +=begin +=end + puts "creating model ..." + model_uri = OpenTox::Algorithm::Lazar.new.run({:dataset_uri => @@classification_training_dataset.uri, :subjectid => @@subjectid}).to_s + lazar = OpenTox::Model::Lazar.find model_uri, @@subjectid + puts @@classification_training_dataset.features.to_yaml + params = { + :algorithm_uri => File.join(CONFIG[:services]["opentox-algorithm"],"lazar"), + :dataset_uri => lazar.parameter("dataset_uri"), + #:dataset_uri => @@classification_training_dataset.uri, + :subjectid => @@subjectid, + #:prediction_feature => @@classification_training_dataset.features.keys.first, + #:algorithm_params => "feature_generation_uri=#{File.join(CONFIG[:services]["opentox-algorithm"],"bbrc")}" + :prediction_feature => lazar.parameter("prediction_feature"), + :algorithm_params => "feature_generation_uri=#{lazar.parameter("feature_generation_uri")}" + } + puts params.to_yaml + cv = OpenTox::Validation.create_crossvalidation(params) + puts cv.uri + #@@subjectid = OpenTox::Authorization.authenticate(TEST_USER,TEST_PW) + cv = OpenTox::Validation.new "http://opentox.informatik.uni-freiburg.de/validation/crossvalidation/6" + puts cv.uri + #puts cv.create_report(@@subjectid) + #puts cv.create_qmrf_report(@@subjectid) + #v = YAML.load OpenTox::RestClientWrapper.get(cv.uri,{:accept => "application/x-yaml", :subjectid => @@subjectid}).to_s + v = YAML.load OpenTox::RestClientWrapper.get(File.join(cv.uri, 'statistics'),{:accept => "application/x-yaml", :subjectid => @@subjectid}).to_s + puts v.to_yaml + #puts cv.summary("classification",@@subjectid) + end +end |