summaryrefslogtreecommitdiff
path: root/validation.rb
diff options
context:
space:
mode:
Diffstat (limited to 'validation.rb')
-rw-r--r--validation.rb45
1 files changed, 45 insertions, 0 deletions
diff --git a/validation.rb b/validation.rb
new file mode 100644
index 0000000..beb1c02
--- /dev/null
+++ b/validation.rb
@@ -0,0 +1,45 @@
+require 'rubygems'
+require 'opentox-ruby'
+require 'test/unit'
+
+class Float
+ def round_to(x)
+ (self * 10**x).round.to_f / 10**x
+ end
+end
+
+class ValidationTest < Test::Unit::TestCase
+
+=begin
+=end
+ def test_crossvalidation
+=begin
+=end
+ puts "creating model ..."
+ model_uri = OpenTox::Algorithm::Lazar.new.run({:dataset_uri => @@classification_training_dataset.uri, :subjectid => @@subjectid}).to_s
+ lazar = OpenTox::Model::Lazar.find model_uri, @@subjectid
+ puts @@classification_training_dataset.features.to_yaml
+ params = {
+ :algorithm_uri => File.join(CONFIG[:services]["opentox-algorithm"],"lazar"),
+ :dataset_uri => lazar.parameter("dataset_uri"),
+ #:dataset_uri => @@classification_training_dataset.uri,
+ :subjectid => @@subjectid,
+ #:prediction_feature => @@classification_training_dataset.features.keys.first,
+ #:algorithm_params => "feature_generation_uri=#{File.join(CONFIG[:services]["opentox-algorithm"],"bbrc")}"
+ :prediction_feature => lazar.parameter("prediction_feature"),
+ :algorithm_params => "feature_generation_uri=#{lazar.parameter("feature_generation_uri")}"
+ }
+ puts params.to_yaml
+ cv = OpenTox::Validation.create_crossvalidation(params)
+ puts cv.uri
+ #@@subjectid = OpenTox::Authorization.authenticate(TEST_USER,TEST_PW)
+ cv = OpenTox::Validation.new "http://opentox.informatik.uni-freiburg.de/validation/crossvalidation/6"
+ puts cv.uri
+ #puts cv.create_report(@@subjectid)
+ #puts cv.create_qmrf_report(@@subjectid)
+ #v = YAML.load OpenTox::RestClientWrapper.get(cv.uri,{:accept => "application/x-yaml", :subjectid => @@subjectid}).to_s
+ v = YAML.load OpenTox::RestClientWrapper.get(File.join(cv.uri, 'statistics'),{:accept => "application/x-yaml", :subjectid => @@subjectid}).to_s
+ puts v.to_yaml
+ #puts cv.summary("classification",@@subjectid)
+ end
+end