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require 'rubygems'
require 'opentox-ruby'
require 'test/unit'
require "./validate-owl.rb"
class Float
def round_to(x)
(self * 10**x).round.to_f / 10**x
end
end
class ExternalAlgorithmTest < Test::Unit::TestCase
# fix dataset
#"http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/J48" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/10", :prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/21595"},
#"http://apps.ideaconsult.net:8080/ambit2/algorithm/toxtreeskinirritation" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" }, # TASK redirects to model
#"http://apps.ideaconsult.net:8080/ambit2/algorithm/org.openscience.cdk.qsar.descriptors.molecular.ALOGPDescriptor" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" }
#""
def test_model_creation
{
# works
=begin
"http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/J48" => {
:params => {
:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/19629",
:prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/111148"
},
:feature_value => []
},
=end
"http://opentox.ntua.gr:3000/algorithm/svm" => {
:params => {
:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/54",
:prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/22201"
#:prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/28364"
},
:feature_value => []
}
}.each do |uri,data|
algorithm = OpenTox::Algorithm::Generic.new uri
model_uri = algorithm.run(data[:params])
#puts model_uri
assert_match /model/, model_uri
end
end
=begin
def test_descriptor_services
{
# works
"http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/CDKPhysChem" => {
:params => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" },
:feature_value => [
"http://apps.ideaconsult.net:8080/ambit2/compound/143948/conformer/420420",
"http://apps.ideaconsult.net:8080/ambit2/feature/26184",
0.5509999990463257
]
},
"http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/JOELIB2" => {
:params => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" },
:feature_value => [
"http://apps.ideaconsult.net:8080/ambit2/compound/143948/conformer/420420",
"http://apps.ideaconsult.net:8080/ambit2/feature/26556",
4.16669988632202
]
},
}.each do |uri,data|
algorithm = OpenTox::Algorithm::Generic.new uri
dataset_uri = algorithm.run(data[:params])
puts dataset_uri
dataset = OpenTox::Dataset.find dataset_uri
assert_equal dataset.compounds.size, 3
c = data[:feature_value][0]
f = data[:feature_value][1]
v = dataset.data_entries[c][f].first.to_f
assert_equal v.round_to(5), data[:feature_value][2].round_to(5)
#dataset.delete
#puts dataset.to_yaml
end
end
=end
end
|
