1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
|
require 'rubygems'
require 'opentox-ruby'
require 'test/unit'
require 'validate-owl.rb'
class FminerTest < Test::Unit::TestCase
=begin
=end
def test_bbrc
feature = @@classification_training_dataset.features.keys.first
dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
assert_equal 41, d.features.size
#validate_owl
d.delete(@@subjectid)
end
def test_last
feature = @@classification_training_dataset.features.keys.first
dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
assert_equal 36, d.features.size
#validate_owl
d.delete(@@subjectid)
end
def test_regression_bbrc
feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol"
dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
assert_equal 222, d.features.size
d.delete(@@subjectid)
end
def test_regression_last
feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol"
dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
assert_equal 16, d.features.size
d.delete(@@subjectid)
end
=begin
=end
end
|
