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require 'rubygems'
require 'opentox-ruby'
require 'test/unit'
require 'validate-owl.rb'
class FminerTest < Test::Unit::TestCase
def test_bbrc
feature = @@classification_training_dataset.features.keys.first
dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
assert_equal 52, d.features.size
d.delete(@@subjectid)
end
def test_regression_bbrc
feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol"
dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid, :feature_type=>"paths"}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
#assert_equal 185, d.features.size
assert_equal 219, d.features.size
d.delete(@@subjectid)
end
def test_last
feature = @@classification_training_dataset.features.keys.first
dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
d =OpenTox::Dataset.new dataset_uri, @@subjectid
d.load_features(@@subjectid)
assert_equal 23, d.features.size
d.delete(@@subjectid)
end
# Deactivated by AM because of efficiency problems (does not return)
# def test_regression_last
# feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol"
# dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
# d =OpenTox::Dataset.new dataset_uri, @@subjectid
# d.load_features(@@subjectid)
# assert_equal 4, d.features.size
# d.delete(@@subjectid)
# end
end
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