1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
|
require 'rubygems'
require 'opentox-ruby'
require 'test/unit'
require 'validate-owl'
class ParserTest < Test::Unit::TestCase
def setup
#@new_dataset = OpenTox::Dataset.from_csv(File.open("data/hamster_carcinogenicity.csv").read)
#@new_dataset.add_metadata( OT.hasSource => "data/hamster_carcinogenicity.csv", DC.creator => "opentox-test", DC.title => "Hamster Carcinogenicity" )
#@new_dataset.save
@datasets = {
@@classification_training_dataset.uri => {
:nr_compounds => 85,
:nr_features => 1,
:nr_dataset_features => 1,
:nr_data_entries => 85
},
"http://apps.ideaconsult.net:8080/ambit2/dataset/2698" => {
:nr_compounds => 3,
:nr_features => 8,
:nr_dataset_features => 36,
:nr_data_entries => 3
}
}
end
def teardown
#@new_dataset.delete
end
def test_dataset
@datasets.each do |uri,properties|
parser = OpenTox::Parser::Owl::Dataset.new uri, @@subjectid
@dataset = parser.load_uri(@@subjectid)
validate properties
end
end
def validate(data)
#puts @dataset.yaml
assert_kind_of OpenTox::Dataset, @dataset
assert_equal @dataset.data_entries.size, data[:nr_data_entries]
assert_equal @dataset.compounds.size, data[:nr_compounds]
assert_equal @dataset.features.size, data[:nr_dataset_features]
# fails for ambit datasets
#assert_equal @dataset.uri, @dataset.metadata[XSD.anyURI]
end
end
|
