diff options
| author | Christoph Helma <helma@in-silico.ch> | 2010-11-24 13:10:52 +0100 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2010-11-24 13:10:52 +0100 |
| commit | 1952b3ed877e4791429512def5bd7102e4ba7a99 (patch) | |
| tree | 624d3fde40b7abd2ae902e9635b1a1dcfa5df2b0 /model.rb | |
| parent | 99e3566a11a1d51df91a6d3d016e8ec260920020 (diff) | |
opentox-ruby-api-wrapper renamed to opentox-ruby
Diffstat (limited to 'model.rb')
| -rw-r--r-- | model.rb | 42 |
1 files changed, 22 insertions, 20 deletions
@@ -5,19 +5,23 @@ class ToxCreateModel property :id, Serial property :name, String, :length => 255 property :warnings, Text, :length => 2**32-1 + property :error_messages, Text, :length => 2**32-1 # :errors interferes with datamapper validation property :type, String + property :status, String, :length => 255 property :created_at, DateTime property :task_uri, String, :length => 255 property :uri, String, :length => 255 - property :validation_task_uri, String, :length => 255 + property :training_dataset, String, :length => 255 + property :feature_dataset, String, :length => 255 + #property :validation_task_uri, String, :length => 255 property :validation_uri, String, :length => 255 - property :validation_report_task_uri, String, :length => 255 + #property :validation_report_task_uri, String, :length => 255 property :validation_report_uri, String, :length => 255 - property :validation_qmrf_task_uri, String, :length => 255 + #property :validation_qmrf_task_uri, String, :length => 255 property :validation_qmrf_uri, String, :length => 255 property :nr_compounds, Integer @@ -34,13 +38,16 @@ class ToxCreateModel property :root_mean_squared_error, Float property :mean_absolute_error, Float - def status +=begin +def status #begin RestClient.get(File.join(@task_uri, 'hasStatus')).body #rescue # "Service offline" #end end +=end +=begin def validation_status begin @@ -92,29 +99,23 @@ class ToxCreateModel def process + LOGGER.debug self.to_yaml + if @uri.nil? and status == "Completed" - update :uri => RestClient.get(File.join(@task_uri, 'resultURI')).body - lazar = YAML.load(RestClient.get(@uri, :accept => "application/x-yaml").body) - case lazar.dependentVariables - when /classification/ - update :type => "classification" - when /regression/ - update :type => "regression" - else - update :type => "unknown" - end + #update :uri => RestClient.get(File.join(@task_uri, 'resultURI')).body + #lazar = YAML.load(RestClient.get(@uri, :accept => "application/x-yaml").body) elsif @validation_uri.nil? and validation_status == "Completed" begin - update :validation_uri => RestClient.get(File.join(@validation_task_uri, 'resultURI')).body - LOGGER.debug "Validation URI: #{@validation_uri}" + #update :validation_uri => RestClient.get(File.join(@validation_task_uri, 'resultURI')).body + #LOGGER.debug "Validation URI: #{@validation_uri}" - update :validation_report_task_uri => RestClient.post(File.join(@@config[:services]["opentox-validation"],"/report/crossvalidation"), :validation_uris => @validation_uri).body - LOGGER.debug "Validation Report Task URI: #{@validation_report_task_uri}" + #update :validation_report_task_uri => RestClient.post(File.join(CONFIG[:services]["opentox-validation"],"/report/crossvalidation"), :validation_uris => @validation_uri).body + #LOGGER.debug "Validation Report Task URI: #{@validation_report_task_uri}" - update :validation_qmrf_task_uri => RestClient.post(File.join(@@config[:services]["opentox-validation"],"/reach_report/qmrf"), :model_uri => @uri).body - LOGGER.debug "QMRF Report Task URI: #{@validation_qmrf_task_uri}" + #update :validation_qmrf_task_uri => RestClient.post(File.join(CONFIG[:services]["opentox-validation"],"/reach_report/qmrf"), :model_uri => @uri).body + #LOGGER.debug "QMRF Report Task URI: #{@validation_qmrf_task_uri}" uri = File.join(@validation_uri, 'statistics') yaml = RestClient.get(uri).body @@ -178,6 +179,7 @@ class ToxCreateModel end end +=end end |