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-rw-r--r--views/ambit.haml15
-rw-r--r--views/compound_image.haml1
-rw-r--r--views/create.haml12
-rw-r--r--views/echa.haml13
-rw-r--r--views/feature.haml26
-rw-r--r--views/feature_table.haml4
-rw-r--r--views/help.haml8
-rw-r--r--views/layout.haml10
-rw-r--r--views/lazar.haml106
-rw-r--r--views/lazar_algorithm.haml4
-rw-r--r--views/lazar_description.haml4
-rw-r--r--views/login.haml26
-rw-r--r--views/model.haml25
-rw-r--r--views/model_name.haml2
-rw-r--r--views/model_name_edit.haml7
-rw-r--r--views/models.haml8
-rw-r--r--views/predict.haml13
-rw-r--r--views/regression_validation.haml6
-rw-r--r--views/significant_fragments.haml2
-rw-r--r--views/style.sass8
-rw-r--r--views/unit.haml2
21 files changed, 177 insertions, 125 deletions
diff --git a/views/ambit.haml b/views/ambit.haml
new file mode 100644
index 0000000..685c0dc
--- /dev/null
+++ b/views/ambit.haml
@@ -0,0 +1,15 @@
+%b Select:
+= session[:echa].split('#').last
+= "->"
+%b Dataset
+%em= "-> Prediction Feature"
+
+%form{ :action => url_for('/feature'), :method => "post" }
+ %input{:type => 'hidden', :name => 'subjectid', :id => 'subjectid', :value => session[:subjectid]}
+
+ - @datasets.each do |dataset|
+ %br
+ %input{:type=>'radio', :name => "dataset", :value => dataset} #{OpenTox::Dataset.new(dataset).load_metadata[DC.title]}
+
+ %p
+ %input{:type => 'submit', :value => 'Next'}
diff --git a/views/compound_image.haml b/views/compound_image.haml
index 18944dc..25e0dbf 100644
--- a/views/compound_image.haml
+++ b/views/compound_image.haml
@@ -1,2 +1 @@
%img{:src => compound.matching_smarts_image_uri(features[:activating].collect{|f| f[:smarts]},features[:deactivating].collect{|f| f[:smarts]}), :alt => compound.to_smiles}
-
diff --git a/views/create.haml b/views/create.haml
index 5450ddf..0b299f5 100644
--- a/views/create.haml
+++ b/views/create.haml
@@ -17,18 +17,24 @@
= link_to "instructions for creating training datasets", '/help'
before submitting.
+
%form{ :action => url_for('/models'), :method => "post", :enctype => "multipart/form-data" }
%input{:type => 'hidden', :name => 'subjectid', :id => 'subjectid', :value => session[:subjectid]}
%fieldset
%label{:for => 'file'}
- Select training data in
+ Upload training data in
= link_to "Excel", '/help'
or
= link_to "CSV", '/help'
format:
%input{:type => 'file', :name => 'file', :id => 'file', :size => '41'}
%input{ :type => "submit", :value => "Create model"}
- = link_to "Cancel", '/create'
+ =# link_to "Cancel", '/create'
+
+ %p
+ or
+ %a{:href => "echa"} Select a AMBIT dataset
+ (experimental)
-# explanations
= haml :lazar_description, :layout => false
@@ -45,5 +51,5 @@
and your models can be modified or deleted by other guests. Please
= link_to "log in", "/login"
with your
- %a{:href => "www.opentox.org"} OpenTox
+ %a{:href => "http://www.opentox.org", :rel => "external"} OpenTox
account to control your model permissions.
diff --git a/views/echa.haml b/views/echa.haml
new file mode 100644
index 0000000..1cabfa0
--- /dev/null
+++ b/views/echa.haml
@@ -0,0 +1,13 @@
+%b Select:
+%b ECHA Endpoint
+%em= "-> Dataset -> Prediction Feature"
+
+%form{ :action => url_for('/ambit'), :method => "post" }
+ %input{:type => 'hidden', :name => 'subjectid', :id => 'subjectid', :value => session[:subjectid]}
+
+ - @endpoints.each do |endpoint|
+ %br
+ %input{:type=>'radio', :name => "endpoint", :value => endpoint} #{endpoint.split('#').last}
+
+ %p
+ %input{:type => 'submit', :value => "Next"}
diff --git a/views/feature.haml b/views/feature.haml
new file mode 100644
index 0000000..c5b8293
--- /dev/null
+++ b/views/feature.haml
@@ -0,0 +1,26 @@
+%b Select:
+= session[:echa].split('#').last
+= "->"
+= OpenTox::Dataset.new(session[:dataset]).load_metadata[DC.title]
+= "->"
+%b Prediction feature
+
+%form{ :action => url_for('/models'), :method => "post" }
+
+ %input{:type => 'hidden', :name => 'subjectid', :id => 'subjectid', :value => session[:subjectid]}
+ %input{:type => 'hidden', :name => 'dataset', :id => 'dataset', :value => session[:dataset]}
+
+ - @features.each do |feature|
+ -# type = "unknown"
+ -# if feature.metadata[RDF.type].include?(OT.NominalFeature)
+ - type = "classification"
+ -# elsif feature.metadata[RDF.type].include?(OT.NumericFeature)
+ - type = "regression"
+
+ %br
+ %input{:type=>'radio', :name => "prediction_feature", :value => feature.uri} #{feature.metadata[DC.title]} (#{feature.feature_type})
+ %br
+ =# feature.inspect
+
+ %p
+ %input{:type => 'submit', :value => "Create model"}
diff --git a/views/feature_table.haml b/views/feature_table.haml
index 4fa927c..a8a153f 100644
--- a/views/feature_table.haml
+++ b/views/feature_table.haml
@@ -4,7 +4,7 @@
%th
activating
(
- %a{:href => "http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html"} SMARTS
+ %a{:href => "http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html", :rel => "external"} SMARTS
)
%th p value
- if features[:activating]
@@ -17,7 +17,7 @@
%th
deactivating
(
- %a{:href => "http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html"} SMARTS
+ %a{:href => "http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html", :rel => "external"} SMARTS
)
%th p value
- if features[:deactivating]
diff --git a/views/help.haml b/views/help.haml
index da6495e..3d39641 100644
--- a/views/help.haml
+++ b/views/help.haml
@@ -1,7 +1,7 @@
= link_to "Back to model creation", '/create'
%p
Input files have two columns. Enter in the first column the chemical structure in
- %a{:href => "http://en.wikipedia.org/wiki/Simplified_molecular_input_line_entry_specification"} SMILES
+ %a{:href => "http://en.wikipedia.org/wiki/Simplified_molecular_input_line_entry_specification", :rel => "external"} SMILES
format, in the second column the toxic activity. The first line contains a description of the columns and is ignored.
%dl
%dt Classification datasets
@@ -12,15 +12,15 @@
%ul
%li
use
- %a{:href => "http://en.wikipedia.org/wiki/Molar_(concentration)"} molar
+ %a{:href => "http://en.wikipedia.org/wiki/Molar_(concentration)", :rel => "external"} molar
units
%li enter non-logarithmic values (logarithms are taken internally)
%li avoid 0 activities (will be ignored)
%p
Input files are accepted in
- %a{:href => "http://en.wikipedia.org/wiki/Microsoft_Excel"} Excel
+ %a{:href => "http://en.wikipedia.org/wiki/Microsoft_Excel", :rel => "external"} Excel
and
- %a{:href => "http://en.wikipedia.org/wiki/Comma-separated_values"} CSV
+ %a{:href => "http://en.wikipedia.org/wiki/Comma-separated_values", :rel => "external"} CSV
formats.
%h3 Excel example
diff --git a/views/layout.haml b/views/layout.haml
index cdabe43..174db9f 100644
--- a/views/layout.haml
+++ b/views/layout.haml
@@ -17,7 +17,7 @@
Create and evaluate models to predict toxicity
.index
%ul
- %li{:class => ("selected" if /\/create/ =~ request.path )}
+ %li{:class => ("selected" if /\/create|echa|ambit|feature/ =~ request.path )}
= link_to "Create", "/create"
%li{:class => ("selected" if /models/ =~ request.path )}
= link_to "Inspect", "/models"
@@ -37,7 +37,7 @@
- if `hostname`.match(/ot-test/)
.notice
This service is for testing purposes only - once a week all models will be deleted. Please send bug reports and feature requests to our
- %a{:href => 'http://github.com/opentox/toxcreate/issues'} issue tracker.
+ %a{:href => 'http://github.com/opentox/toxcreate/issues', :rel => "external"} issue tracker.
- if flash[:notice]
%p
@@ -48,6 +48,6 @@
.footer
©
- %a{:href => 'http://www.in-silico.ch'} in silico toxicology
- 2009-2010, powered by
- %a{:href => 'http://www.opentox.org'} <span style="color:#5D308A;font-family:arial,sans-serif,helvetica;letter-spacing:-1px;">Open</span><span style="color:#000;font-family:arial,sans-serif,helvetica;font-weight:bold;letter-spacing:-1px;position:relative;">Tox</span>
+ %a{:href => 'http://www.in-silico.ch', :rel => "external"} in silico toxicology
+ 2009-2011, powered by
+ %a{:href => 'http://www.opentox.org', :rel => "external"} <span style="color:#5D308A;font-family:arial,sans-serif,helvetica;letter-spacing:-1px;">Open</span><span style="color:#000;font-family:arial,sans-serif,helvetica;font-weight:bold;letter-spacing:-1px;">Tox</span>
diff --git a/views/lazar.haml b/views/lazar.haml
index 3de7400..3f1d030 100644
--- a/views/lazar.haml
+++ b/views/lazar.haml
@@ -1,59 +1,47 @@
-%p= link_to "New prediction", "/predict"
-.lazar-predictions
-
- -# explanations
- = haml :lazar_algorithm, :layout => false
- = haml :confidence, :layout => false
- = haml :similarity, :layout => false
- = haml :significant_fragments, :layout => false
- = haml :training_data, :layout => false
-
- %a{:name => "prediction"}
- %table
- %thead
- %tr
- %th= @prediction.title
- %th= toggle_link("#lazar_algorithm","Prediction")
- %th= toggle_link("#confidence","Confidence")
- %th Supporting information
-
- %tr
- -# %td
- %img{:src => @compound.to_image_uri, :alt => @compound.to_smiles}
- %td.image= compound_image(@compound,@prediction.descriptors(@compound))
- %td= activity_markup(@prediction.value(@compound))
- %td= sprintf('%.03g', @prediction.confidence(@compound))
- -#%td= @prediction.confidence(@compound)
- %td
- %ul
- %li
- %a{:href => "#prediction", :id => "show_names"} Names and synonyms
- :javascript
- $("a#show_names").click(function () {
- $("#compound_names").load("#{File.join("/compound",@compound.inchi)}");
- $("tr#names").toggle();
- });
- %li= toggle_link("#fragments","Significant fragments")
- -# This does not work, ask nina/vedrin
- -# %li
- %a{:href => "http://ambit.uni-plovdiv.bg:8080/ambit2/query/structure/?search=#{@compound.smiles}"} Ambit data
- -# %li
- %a{:href => "http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=PureSearch&db=pccompound&term=#{URI.encode('"'+@compound.inchi+'"[InChI]')}"} PubChem data
- (external)
- -# %li
- %a{:href => "http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?result=advanced&inchi=#{URI.encode @compound.inchi}"} ToxNet data
- -#http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?result=advanced&regno=000143157
-
- %tr#names{ :style => "display: none;" }
- %td{:colspan => '4'}
- %a{:name => 'names'}
- = hide_link('#names')
- #compound_names
- %tr#fragments{ :style => "display: none;" }
- %td{:colspan => '4'}
- = hide_link('#fragments')
- = haml :feature_table, :locals => {:features => sort(@prediction.descriptors(@compound))}, :layout => false
-
- %tbody#neighbors
- = haml :neighbors, :locals => {:neighbors => @prediction.neighbors(@compound), :page => @page}, :layout => false
-
+%p= link_to "New prediction", "/predict"
+.lazar-predictions
+
+ -# explanations
+ = haml :lazar_algorithm, :layout => false
+ = haml :confidence, :layout => false
+ = haml :similarity, :layout => false
+ = haml :significant_fragments, :layout => false
+ = haml :training_data, :layout => false
+
+ %a{:name => "prediction"}
+ %table
+ %thead
+ %tr
+ %th= @prediction.title
+ %th= toggle_link("#lazar_algorithm","Prediction")
+ %th= toggle_link("#confidence","Confidence")
+ %th Supporting information
+
+ %tr
+ %td.image= compound_image(@compound,@prediction.descriptors(@compound))
+ %td= activity_markup(@prediction.value(@compound))
+ %td= sprintf('%.03g', @prediction.confidence(@compound))
+ %td
+ %ul
+ %li
+ %a{:href => "#prediction", :id => "show_names"} Names and synonyms
+ :javascript
+ $("a#show_names").click(function () {
+ $("#compound_names").load("#{File.join("/compound",@compound.inchi)}");
+ $("tr#names").toggle();
+ });
+ %li= toggle_link("#fragments","Significant fragments")
+
+ %tr#names{ :style => "display: none;" }
+ %td{:colspan => '4'}
+ %a{:name => 'names'}
+ = hide_link('#names')
+ #compound_names
+ %tr#fragments{ :style => "display: none;" }
+ %td{:colspan => '4'}
+ = hide_link('#fragments')
+ = haml :feature_table, :locals => {:features => sort(@prediction.descriptors(@compound))}, :layout => false
+
+ %tbody#neighbors
+ = haml :neighbors, :locals => {:neighbors => @prediction.neighbors(@compound), :page => @page}, :layout => false
+
diff --git a/views/lazar_algorithm.haml b/views/lazar_algorithm.haml
index b83de6b..85823b5 100644
--- a/views/lazar_algorithm.haml
+++ b/views/lazar_algorithm.haml
@@ -20,13 +20,13 @@
a majority vote (weighted by compound similarity) for
%em classification
(
- %a{:href => "http://www.in-silico.de/articles/modi020905.pdf"} original publication
+ %a{:href => "http://www.in-silico.de/articles/modi020905.pdf", :rel => "external"} original publication
)
%li
a local QSAR model based on neighbors for
%em regression
(
- %a{:href => "http://www.in-silico.de/articles/mh_tf.pdf"} original publication
+ %a{:href => "http://www.in-silico.de/articles/mh_tf.pdf", :rel => "external"} original publication
)
%p
diff --git a/views/lazar_description.haml b/views/lazar_description.haml
index d8e995d..3eee850 100644
--- a/views/lazar_description.haml
+++ b/views/lazar_description.haml
@@ -18,11 +18,11 @@
a majority vote (weighted by compound similarity) for
%em= toggle_link("#classification","classification")
(
- %a{:href => "http://www.in-silico.de/articles/modi020905.pdf"} original publication
+ %a{:href => "http://www.in-silico.de/articles/modi020905.pdf", :rel => "external"} original publication
)
%li
a local QSAR model based on neighbors for
%em= toggle_link("#regression","regression")
(
- %a{:href => "http://www.in-silico.de/articles/mh_tf.pdf"} original publication
+ %a{:href => "http://www.in-silico.de/articles/mh_tf.pdf", :rel => "external"} original publication
)
diff --git a/views/login.haml b/views/login.haml
index 6d15bb7..e944e77 100644
--- a/views/login.haml
+++ b/views/login.haml
@@ -7,15 +7,15 @@
and your models can be modified or deleted by other guests.
To control models permissions you can
log in with your
- %a{:href => "http://www.opentox.org"} OpenTox
- username/password below. If have no
- %a{:href => "http://www.opentox.org"} OpenTox
- account yet you can
- %a{:href => "http://www.opentox.org/join_form"} register here.
+ %a{:href => "http://www.opentox.org", :rel => "external"} OpenTox
+ username/password below. If you don't have an
+ %a{:href => "http://www.opentox.org", :rel => "external"} OpenTox
+ account yet you could
+ %a{:href => "http://www.opentox.org/join_form", :rel => "external"} register here.
- else
%p
Change
- %a{:href => "http://www.opentox.org"} OpenTox
+ %a{:href => "http://www.opentox.org", :rel => "external"} OpenTox
account:
-# if !logged_in()
@@ -33,15 +33,5 @@
%form{ :action => url_for('/login'), :method => "post" }
%input{:type => 'hidden', :name => 'username', :id => 'username', :value => "guest"}
%input{:type => 'hidden', :name => 'password', :id => 'password', :value => "guest"}
- %input{ :type => "submit", :value => "Login as guest"}
- -# else
- %form{ :action => url_for('/logout'), :method => "post" }
- -#%p
- You are logged in as:
- %b= session[:username]
- -# if LOGGER.level == Logger::DEBUG
- %br
- = session[:subjectid]
- %input{ :type => "submit", :value => "Switch user"}
- = link_to "Cancel", '/login'
-
+ %input{:type => "submit", :value => "Login as guest"}
+
diff --git a/views/model.haml b/views/model.haml
index 91d7016..b4b3c59 100644
--- a/views/model.haml
+++ b/views/model.haml
@@ -18,7 +18,7 @@
- if (task = OpenTox::Task.exist?(model.task_uri))
%input{:type => 'hidden', :id => "model_#{model.id}_task", :value => "#{model.task_uri}"}
- percentage_completed = task.metadata[OT.percentageCompleted].to_i
- - js = "$('#model_#{model.id}_progress').progressbar({ value: #{percentage_completed} })";
+ - js = "$('#model_#{model.id}_progress').progressbar({ value: #{percentage_completed} });"
:javascript
$(function() {
#{js}
@@ -28,15 +28,15 @@
//= haml :model_progress, :locals=>{:percentage_completed=>percentage_completed}, :layout => false
- if is_authorized(model.web_uri, "DELETE")
%a{:href => url_for("/model/#{model.id}"), :id => "delete_#{model.id}", :class => 'delete_link'}
- - if model.status == "Completed"
+ - if model.status =~ /Completed|Error|Cancelled/
(delete)
- else
(stop)
%span
%br
- -#%dt Started:
- -#%dd= model.created_at.strftime("%m/%d/%Y - %I:%M:%S%p")
+ %dt Started:
+ %dd= Time.parse(model.created_at.to_s).strftime("%m/%d/%Y - %I:%M:%S%p") if model.created_at
- if model.nr_compounds
%dt Training compounds:
%dd= model.nr_compounds
@@ -54,16 +54,19 @@
%dd= toggle_link("##{model.type}","#{model.type}")
%dt Descriptors:
%dd
- %a{:href => 'http://www.maunz.de/libfminer2-bbrc-doc/'} Fminer backbone refinement classes
+ %a{:href => 'http://www.maunz.de/libfminer2-bbrc-doc/', :rel => "external"} Fminer backbone refinement classes
- if model.training_dataset
%dt Training dataset:
%dd
- %a{:href => "#{model.training_dataset}.xls#{subjectstring}"} Excel sheet
- ,
- -#%a{:href => "#{model.training_dataset}.rdf"} RDF/XML
- -#%em (experts) ,
- %a{:href => "#{model.training_dataset}.yaml#{subjectstring}" } YAML
- %em (experts)
+ - if model.training_dataset.match(/ambit/i)
+ %a{:href => "#{model.training_dataset}#{subjectstring}", :rel => "external"} Ambit database
+ - else
+ %a{:href => "#{model.training_dataset}.xls#{subjectstring}"} Excel sheet
+ ,
+ -#%a{:href => "#{model.training_dataset}.rdf"} RDF/XML
+ -#%em (experts) ,
+ %a{:href => "#{model.training_dataset}.yaml#{subjectstring}" } YAML
+ %em (experts)
- if model.feature_dataset
%dt Feature dataset:
%dd
diff --git a/views/model_name.haml b/views/model_name.haml
index b1f6f10..91516ce 100644
--- a/views/model_name.haml
+++ b/views/model_name.haml
@@ -1,4 +1,4 @@
-- js = "$('#edit_#{model.id}').editModel('PUT', {id: '#{model.id}', mode: 'edit'});\n "
+- js = "$('#edit_#{model.id}').editModel({id: '#{model.id}', mode: 'edit'});\n "
:javascript
$(function() {
#{js}
diff --git a/views/model_name_edit.haml b/views/model_name_edit.haml
index aec59fc..d92c68a 100644
--- a/views/model_name_edit.haml
+++ b/views/model_name_edit.haml
@@ -1,5 +1,5 @@
-- js = "$('#cancel_#{model.id}').editModel('GET', {id: '#{model.id}', mode: 'show'});\n "
-- js = "$('#save_#{model.id}').saveModel('POST', {id: '#{model.id}', mode: 'show'});\n "
+- js = "$('#cancel_#{model.id}').cancelEdit({id: '#{model.id}', mode: 'show'});\n "
+- js += "$('#save_#{model.id}').saveModel({id: '#{model.id}', mode: 'show'});\n "
:javascript
$(function() {
#{js}
@@ -10,5 +10,4 @@
%input{:type => 'hidden', :name => 'subjectid', :id => 'subjectid', :value => session[:subjectid]}
%input{ :type => "submit", :value => "Save", :id => "save_#{model.id}", :class => "edit_button"}
%span{:class => "edit_button"}
- %a{:href => url_for("/model/#{model.id}/name?mode=show"), :id => "cancel_#{model.id}"} Cancel
-
+ %a{:href => "#", :id => "cancel_#{model.id}"} Cancel
diff --git a/views/models.haml b/views/models.haml
index 67c061c..6724807 100644
--- a/views/models.haml
+++ b/views/models.haml
@@ -6,18 +6,18 @@
setTimeout('checkStati("#{stati_to_check}", "#{subjectstring}")',5000);
}
var reload_validation = true;
- //if(reload_validation) setTimeout('checkValidation()',15000);
});
-# %p Get an overview about ToxCreate models. This page is refreshed every 15 seconds to update the model status.
%p Get an overview about ToxCreate models. Parts of this page are refreshed every 5 seconds to update the model status.
-# explanations
-= haml :lazar_description, :layout => false
= haml :classification, :layout => false
+= haml :lazar_description, :layout => false
= haml :regression, :layout => false
= haml :similarity, :layout => false
= haml :significant_fragments, :layout => false
-- @models.each do |model|
- = haml :model, :locals=>{:model=>model,:subjectstring=>subjectstring}, :layout => false
+- if @models
+ - @models.each do |model|
+ = haml :model, :locals=>{:model=>model,:subjectstring=>subjectstring}, :layout => false
diff --git a/views/predict.haml b/views/predict.haml
index d8c34a2..ec667e6 100644
--- a/views/predict.haml
+++ b/views/predict.haml
@@ -18,18 +18,25 @@
%param{ :name => "options", :value => "polarnitro"}
Please enable Java and JavaScript in your browser to use the JME editor.
+ %jme_info
+ <span style="font-size:75%">&copy;
+ %a{:href => 'http://www.molinspiration.com/jme/index.html', :rel => "external"} JME Editor
+ courtesy of Peter Ertl, Novartis</span>
+ %br
%label{:for => 'identifier'} or enter a Name, InChI, Smiles, CAS, ...
%input{:type => 'text', :name => 'identifier', :id => 'identifier', :size => '60'}
+ %br
%fieldset
%legend
Choose one or more prediction models
+ %br
- @models.each do |model|
+ %input{:type => 'checkbox', :name => "selection[#{model.id}]", :value => true, :id => "model#{model.id}", :disabled => false}
%label{:for => "model#{model.id}"}
= model.name
- -#%input{:type => 'checkbox', :name => "selection[#{model.id}]", :value => true, :id => model.id, :disabled => !is_authorized(model.uri, "GET")}
- %input{:type => 'checkbox', :name => "selection[#{model.id}]", :value => true, :id => "model#{model.id}", :disabled => false}
+ -#%input{:type => 'checkbox', :name => "selection[#{model.id}]", :value => true, :id => model.id, :disabled => !is_authorized(model.uri, "GET")}
%br
-
+ %br
%input{:type => 'hidden', :name => 'subjectid', :id => 'subjectid', :value => session[:subjectid]}
%input{ :type => "submit", :value => "Predict", :onclick => "getsmiles();"}
= link_to 'Cancel', '/predict'
diff --git a/views/regression_validation.haml b/views/regression_validation.haml
index d5b3f6a..5b29d88 100644
--- a/views/regression_validation.haml
+++ b/views/regression_validation.haml
@@ -1,9 +1,9 @@
%dt
- %a{:href => "http://en.wikipedia.org/wiki/R-squared"} R-squared
+ %a{:href => "http://en.wikipedia.org/wiki/R-squared", :rel => "external"} R-squared
%dd= sprintf '%.03g', model.r_square.to_f
%dt
- %a{:href => "http://en.wikipedia.org/wiki/Root_mean_square_deviation"} Root Mean Square Error
+ %a{:href => "http://en.wikipedia.org/wiki/Root_mean_square_deviation", :rel => "external"} Root Mean Square Error
%dd= sprintf '%.03g', model.root_mean_squared_error.to_f
%dt
- %a{:href => "http://en.wikipedia.org/wiki/Mean_absolute_error"} Mean Absolute Error
+ %a{:href => "http://en.wikipedia.org/wiki/Mean_absolute_error", :rel => "external"} Mean Absolute Error
%dd= sprintf '%.03g', model.mean_absolute_error.to_f
diff --git a/views/significant_fragments.haml b/views/significant_fragments.haml
index 87cb113..bd39826 100644
--- a/views/significant_fragments.haml
+++ b/views/significant_fragments.haml
@@ -6,5 +6,5 @@
)
%dd
Substructures that occur (statistically significant) more frequently in active or inactive compounds. Substuctures can take any shape (without cycles) and are determined with the
- %a{:href => "http://www.maunz.de/libfminer2-bbrc-doc/"} fminer
+ %a{:href => "http://www.maunz.de/libfminer2-bbrc-doc/", :rel => "external"} fminer
algorithm.
diff --git a/views/style.sass b/views/style.sass
index db1f1bf..ffae6a5 100644
--- a/views/style.sass
+++ b/views/style.sass
@@ -18,6 +18,9 @@ body
color: $ot_purple
a:hover
color: black
+ a[rel="external"]
+ background: transparent url('../external.gif') center right no-repeat
+ padding-right: 15px
.headline
.logo
@@ -90,6 +93,7 @@ body
font-weight: bold
color: $fg_color
label
+ cursor: pointer
//width: 28em
//display: block
//float: left
@@ -127,7 +131,9 @@ body
padding: 0.5em
img
padding: 0
- height: 100%
+ //height: 100%
+ width: 150px
+ height: 150px
.lazar-predictions
clear: both
diff --git a/views/unit.haml b/views/unit.haml
index a352599..88433b5 100644
--- a/views/unit.haml
+++ b/views/unit.haml
@@ -6,5 +6,5 @@
)
%dd
Unit of measurement, e.g. mmol or mmol/kg-bodyweight. For optimal performance you should use
- %a{:href => "http://en.wikipedia.org/wiki/Molar_(concentration)"} molar
+ %a{:href => "http://en.wikipedia.org/wiki/Molar_(concentration)", :rel => "external"} molar
units.
generated by cgit v1.2.3 (git 2.25.1) at 2024-05-22 01:05:10 +0000