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|
:javascript
$(document).ready(function() {
$(".endpoint_list").click(function() {
elem = this.id;
title = $("label#label_" + elem).html();
if($("ul#list_" + elem)) {
if ($("ul#list_" + elem).is(":hidden")) {
$("ul#list_" + elem).slideDown("slow");
} else {
$("ul#list_" + elem).slideUp("slow");
}
}
$("span#endpoint_label").html(title);
});
$("#endpoint_list_button").click(function() {
if ($("div#div_endpoint").is(":hidden")) {
$("div#div_endpoint").slideDown("slow");
$("input#endpoint_list_button").val("Hide");
$("input#endpoint_list_button").toggleClass("ok_button", true);
} else {
$("div#div_endpoint").slideUp("slow");
$("input#endpoint_list_button").val("Select endpoint");
$("input#endpoint_list_button").toggleClass("ok_button", false);
}
});
});
.input
.notice
%h3 DEPRECATION NOTICE
During the last months we have added a lot of capabilities and algorithms to our framework and tested them with extensive model building and validation. We finally came to the conclusion that the creation of good models still requires a lot of human intervention and that we cannot recommend a simple 1-click interface as in the current ToxCreate version.
%br
Until we have implemented an expert GUI interface you have the following options to construct models (
%a{:href => "http://www.maunz.de"} Andreas Maunz
gives detailed instructions at
%a{:href => "http://opentox-ruby.maunz.de"} http://opentox-ruby.maunz.de
):
%ul
%li
%a{:href => "http://opentox.org/dev/apis/api-1.2"} OpenTox REST interface
%li
%a{:href => "https://github.com/opentox/opentox-ruby"} opentox-ruby
or
%a{:href => "https://github.com/opentox/opentox-client"} opentox-client
Ruby libraries.
%a{:href => "https://github.com/opentox/opentox-client"} opentox-client
is under development and will substitute
%a{:href => "https://github.com/opentox/opentox-ruby"} opentox-ruby
%li
%a{:href => "http://ambit.sourceforge.net//download_otclient.html"} IDEAConsult
or
%a{:href => "https://github.com/alphaville/ToxOtis"} ToxOtis
Java libraries
%li
%a{:href => "http://in-silico.ch"} in silico toxicology
offers model building as a paid service
We will keep the ToxCreate interface available for documentation purposes, but
%em strongly discourage
its use, because the resulting models may perform less than optimal.
%p
You will need to upload training data that includes chemical structures and their measured toxicity values, in
= link_to "Excel", '/help'
,
= link_to "CSV", '/help'
or
= link_to "SDF", '/help'
file formats to create a prediction model. Please read the
= link_to "instructions for creating training datasets", '/help'
before submitting.
%form{ :action => url_for('/models'), :method => "post", :enctype => "multipart/form-data" }
%input{:type => 'hidden', :name => 'subjectid', :id => 'subjectid', :value => session[:subjectid]}
%fieldset
%label{:for => 'file'}
Upload training data in
= link_to "Excel", '/help'
,
= link_to "CSV", '/help'
or
= link_to "SDF", '/help'
format:
%input{:type => 'file', :name => 'file', :id => 'file', :size => '41'}
%br
= haml :create_echa, :layout => false
%br
%input{ :type => "submit", :value => "Create model"}
=# link_to "Cancel", '/create'
-# %p
-# or
-# %a{:href => "echa"} Select a AMBIT dataset
-# (experimental)
-# explanations
= haml :lazar_description, :layout => false
= haml :classification, :layout => false
= haml :regression, :layout => false
= haml :endpoint, :layout => false
= haml :unit, :layout => false
%p
This service creates and validates new
%em= toggle_link("#classification","classification")
and
%em= toggle_link("#regression","regression")
structure-activity models from your experimental data. The models can be used to predict toxicity of new chemicals (e.g. for
%a{:href => "http://ec.europa.eu/environment/chemicals/reach/reach_intro.htm", :rel => "external"} REACH
purposes) and to reduce the need for animal testing. The following methods are currently available:
%ul
%li
= toggle_link("#lazar_description","lazar")
%em= toggle_link("#classification","classification")
models and
%li
= toggle_link("#lazar_description","lazar")
%em= toggle_link("#regression","regression")
models (experimental)
%p
Further modelling algorithms may be added in future versions.
.login_notice
- if session[:username] == "guest"
You are currently logged in as
%b guest
and your models can be modified or deleted by other guests. Please
= link_to "log in", "/login"
with your
%a{:href => "http://www.opentox.org", :rel => "external"} OpenTox
account to control your model permissions.
|
