diff options
Diffstat (limited to 'lib')
| -rwxr-xr-x | lib/ot_predictions.rb | 21 | ||||
| -rwxr-xr-x | lib/validation_db.rb | 18 |
2 files changed, 29 insertions, 10 deletions
diff --git a/lib/ot_predictions.rb b/lib/ot_predictions.rb index 3be845b..2752fcc 100755 --- a/lib/ot_predictions.rb +++ b/lib/ot_predictions.rb @@ -35,7 +35,7 @@ module Lib OTPredictions.to_array( [self] ) end - def self.to_array( predictions, add_pic=false, format=false ) + def self.to_array( predictions, add_pic=false, format=false, validation_uris=nil ) confidence_available = false predictions.each do |p| @@ -43,7 +43,10 @@ module Lib end res = [] conf_column = nil + count = 0 predictions.each do |p| + v_uris = validation_uris[count] if validation_uris + count += 1 (0..p.num_instances-1).each do |i| a = [] @@ -75,6 +78,9 @@ module Lib conf_column = a.size if conf_column==nil a << p.confidence_value(i) end + if validation_uris + a << v_uris[i] + end a << p.identifier(i) res << a end @@ -90,12 +96,13 @@ module Lib end end header = [] - header << "compound" if add_pic - header << "actual value" - header << "predicted value" - header << "classification" if predictions[0].feature_type=="classification" - header << "confidence value" if predictions[0].confidence_values_available? - header << "compound-uri" + header << "Compound" if add_pic + header << "Actual value" + header << "Predicted value" + header << "Classification" if predictions[0].feature_type=="classification" + header << "Confidence value" if predictions[0].confidence_values_available? + header << "Validation URI" if validation_uris + header << "Compound URI" res.insert(0, header) return res diff --git a/lib/validation_db.rb b/lib/validation_db.rb index 7d83966..086853e 100755 --- a/lib/validation_db.rb +++ b/lib/validation_db.rb @@ -6,8 +6,9 @@ require "lib/merge.rb" module Validation - VAL_PROPS_GENERAL = [ :validation_uri, :validation_type, :model_uri, :algorithm_uri, :training_dataset_uri, :prediction_feature, - :test_dataset_uri, :test_target_dataset_uri, :prediction_dataset_uri, :date ] + VAL_PROPS_GENERAL = [ :validation_uri, :validation_type, :model_uri, :algorithm_uri, :algorithm_params, + :training_dataset_uri, :prediction_feature, :test_dataset_uri, :test_target_dataset_uri, + :prediction_dataset_uri, :date ] VAL_PROPS_SUM = [ :num_instances, :num_without_class, :num_unpredicted ] VAL_PROPS_AVG = [:real_runtime, :percent_without_class, :percent_unpredicted ] VAL_PROPS = VAL_PROPS_GENERAL + VAL_PROPS_SUM + VAL_PROPS_AVG @@ -41,7 +42,8 @@ module Validation :weighted_mean_absolute_error, :weighted_root_mean_squared_error, :concordance_correlation_coefficient ] CROSS_VAL_PROPS = [:dataset_uri, :num_folds, :stratified, :random_seed] - CROSS_VAL_PROPS_REDUNDANT = [:crossvalidation_uri, :algorithm_uri, :date] + CROSS_VAL_PROPS + CROSS_VAL_PROPS_REDUNDANT = [:crossvalidation_uri, :algorithm_uri, :algorithm_params, + :prediction_feature, :date] + CROSS_VAL_PROPS ALL_PROPS = VAL_PROPS + VAL_CV_PROPS + VAL_CLASS_PROPS + VAL_REGR_PROPS + CROSS_VAL_PROPS @@ -55,6 +57,7 @@ module Validation attribute :validation_type attribute :model_uri attribute :algorithm_uri + attribute :algorithm_params attribute :training_dataset_uri attribute :test_target_dataset_uri attribute :test_dataset_uri @@ -77,6 +80,11 @@ module Validation index :model_uri index :validation_type index :crossvalidation_id + index :algorithm_uri + index :algorithm_params + index :prediction_feature + index :training_dataset_uri + index :test_dataset_uri attr_accessor :subjectid @@ -141,6 +149,8 @@ module Validation class Crossvalidation < Ohm::Model attribute :algorithm_uri + attribute :algorithm_params + attribute :prediction_feature attribute :dataset_uri attribute :date attribute :num_folds @@ -152,6 +162,8 @@ module Validation attr_accessor :subjectid index :algorithm_uri + index :algorithm_params + index :prediction_feature index :dataset_uri index :num_folds index :random_seed |