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OpenTox Algorithm
=================
* An OpenTox REST Webservice (http://www.opentox.org)
* Implements the OpenTox algorithm API for
- fminer
- lazar
REST operations
---------------
Get a list of all algorithms GET / - URIs of algorithms 200
Get a representation of the GET /fminer - fminer representation 200,404
fminer algorithm
Get a representation of the GET /lazar - lazar representation 200,404
lazar algorithm
Create fminer features POST /fminer dataset_uri, URI for feature dataset 200,400,404,500
feature_uri
Create lazar model POST /lazar dataset_uri, URI for lazar model 200,400,404,500
prediction_feature,
feature_generation_uri
Supported MIME formats (http://chemical-mime.sourceforge.net/)
--------------------------------------------------------------
* application/rdf+xml (default): read/write OWL-DL
Examples
--------
Get the OWL-DL representation of fminer
curl http://webservices.in-silico.ch/algorithm/fminer
Get the OWL-DL representation of lazar
curl http://webservices.in-silico.ch/algorithm/lazar
Create fminer features
curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} http://webservices.in-silico.ch/algorithm/fminer
(feature_uri specifies the dependent variable, e.g. http://www.epa.gov/NCCT/dsstox/CentralFieldDef.html#ActivityOutcome_CPDBAS_Hamster)
Creates a dataset with fminer features (backbone refinement class representatives from supervised graph mining, see http://www.maunz.de/libfminer-doc/). These features can be used e.g. as structural alerts, as descriptors (fingerprints) for prediction models or for similarity calculations.
Create lazar model
curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d feature_generation_uri=http://webservices.in-silico.ch/algorithm/fminer http://webservices.in-silico.ch/test/algorithm/lazar
(feaure_uri specifies the dependent variable, e.g. http://www.epa.gov/NCCT/dsstox/CentralFieldDef.html#ActivityOutcome_CPDBAS_Hamster)
API documentation
-----------------
http://rdoc.info/github/opentox/algorithm
Copyright (c) 2009-2011 Christoph Helma, Martin Guetlein, Micha Rautenberg, Andreas Maunz, David Vorgrimmler, Denis Gebele. See LICENSE for details.
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