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#!/usr/bin/env ruby
require "./config.rb"
require "bundler"
Bundler.require
DATA.each do |d|
puts ""
puts d
dataset_uri = dataset_uri(d)
prediction_feature = prediction_feature(d)
test_dataset_uri = test_dataset_uri(d) if d=="MOU"
[ new_feature_dataset_uri(d), orig_feature_dataset_uri(d) ].each do |feature_dataset_uri|
puts "\nvalidating with features #{feature_dataset_uri}"
params = { :dataset_uri => dataset_uri,
:algorithm_uri => File.join($algorithm[:uri],"lazar"),
:algorithm_params => "feature_dataset_uri=#{feature_dataset_uri};min_sim=0.4;min_train_performance=0.1",
:prediction_feature => prediction_feature}
if (d=="LOAEL-mol" or d=="LOAEL-mg")
params[:loo] = "uniq"
cv_uri = wait_for_task(OpenTox::RestClientWrapper.post("http://localhost:8087/validation/crossvalidation/loo",params))
cv = OpenTox::Crossvalidation.find(cv_uri)
puts "Cross-Validation: "+cv.uri
r = OpenTox::CrossvalidationReport.create(cv.uri)
puts "Report: "+r.uri
elsif (d=="MOU")
params[:training_dataset_uri] = params.delete(:dataset_uri)
params[:test_dataset_uri] = test_dataset_uri
v = OpenTox::Validation.create_training_test_validation(params)
puts "Validation: "+v.uri
r = OpenTox::ValidationReport.create(v.uri)
puts "Report: "+r.uri
# cv_uri = wait_for_task(OpenTox::RestClientWrapper.post("http://localhost:8087/validation/crossvalidation",params))
# cv = OpenTox::Crossvalidation.find(cv_uri)
# puts "Cross-Validation: "+cv.uri
# r = OpenTox::CrossvalidationReport.create(cv.uri)
# puts "Report: "+r.uri
else
raise "add routine"
end
# :split_ratio => 0.925, # only required for training-test-split
# :random_seed => 2}
# v = OpenTox::Validation.create_training_test_split(p)
end
end
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