first version of integration poster

10 files changed, 36 insertions, 30 deletions

diff --git a/markdown_blocks/integration_diagram.md b/markdown_blocks/integration_diagram.md
index f3ff4ba..8330eeb 100644
--- a/markdown_blocks/integration_diagram.md
+++ b/markdown_blocks/integration_diagram.md
@@ -1 +1 @@
-![nano-lazar\cite{gebele_denis_2017_250818}\cite{helma_christoph_2016_215483}\cite{rautenberg_micha_2016_187328} integration](./images/integration.pdf "nano-lazar integration"){width=100%}
\ No newline at end of file
+![`nano-lazar` integration](./images/integration.pdf "nano-lazar integration"){width=100%}
\ No newline at end of file
diff --git a/markdown_blocks/integration_links.md b/markdown_blocks/integration_links.md
index 96139e7..666ee0e 100644
--- a/markdown_blocks/integration_links.md
+++ b/markdown_blocks/integration_links.md
@@ -2,11 +2,11 @@
 
 * eNM ontologies <https://github.com/enanomapper/ontologies>
 
-* nano-lazar GUI <http://nano-lazar.in-silico.ch>
+* `nano-lazar` GUI <https://nano-lazar.in-silico.ch>
 
-* eNM ontology viewer <https://query.enanomapper.net/enm-viewer>
+* eNM `ontology viewer` <https://query.enanomapper.net/enm-viewer>
 
-* nano-lazar REST interface <https://enm.enanomapper.net>
+* `nano-lazar` REST interface <https://enm.in-silico.ch>
 
 * eNM SPARQL interface <https://sparql.enanomapper.net>
 
diff --git a/markdown_blocks/integration_summary.md b/markdown_blocks/integration_summary.md
index e6e3a13..852bb1b 100644
--- a/markdown_blocks/integration_summary.md
+++ b/markdown_blocks/integration_summary.md
@@ -1,6 +1,6 @@
-During the eNanoMapper project in silico toxicologies (IST) public services
+During the eNanoMapper project *in silico* toxicologies (IST) public services
 were adapted to the specification of the eNanoMapper API and new nanoparticle
-specific developments were implemented.  This poster depicts the
+specific developments were implemented. This poster depicts the
 interaction of IST services with eNanoMapper resources of other partners which
 covers use cases like data download/mirroring, augmentation of GUIs with
 ontology queries and nanoparticle descriptor calculation.
diff --git a/markdown_blocks/integration_text.md b/markdown_blocks/integration_text.md
index 78714ad..5e11d31 100644
--- a/markdown_blocks/integration_text.md
+++ b/markdown_blocks/integration_text.md
@@ -1,31 +1,31 @@
-## `lazar`
+**`lazar`** \cite{helma_2017}\cite{helma_christoph_2016_215483}
 
   - Mirrors eNanoMapper data for read-across models
   - Creates read-across predictions for the `nano-lazar` webinterface
   - Responds to requests from the `lazar-rest` interface (e.g. nanoparticle predictions, model creation and validation, descriptor calculation)
 
-## RDF store
+**RDF store**
 
   - Mirrors eNanoMapper data and ontologies
   - Responds to SPARQL queries from the ontology viewer and the SPARQL interface
 
-## `nano-lazar` GUI
+**`nano-lazar` GUI** \cite{gebele_denis_2017_250818}
 
   - Obtains nanoparticle toxicity predictions from the `lazar` library
   - Uses ontologies (eNanoMapper, BioPortal, UniProt) to explain domain specific terms in the user interface
   - Uses ontologies and eNanoMapper data as supporting information for read-across predictions
 
-## eNM ontology viewer
+**eNM `ontology viewer`**
 
   - Sends SPARQL queries to the RDF store
   - Visualises RDF response from the RDF store
 
-## nano-lazar REST interface
+**`nano-lazar` REST interface** \cite{rautenberg_micha_2016_187328}
 
   - Interacts with the `lazar` library (e.g. for toxicity predictions, model creation and validation, descriptor calculation)
   - Will be maintained and developed in the FP7 OpenRiskNet project
 
-## eNM SPARQL interface
+**eNM SPARQL interface**
 
   - Sends SPARQL queries to the RDF store
   - Receives SPARQL query results in different formats
diff --git a/markdown_blocks/services_sparql.md b/markdown_blocks/services_sparql.md
index b2a9562..1b51e8c 100644
--- a/markdown_blocks/services_sparql.md
+++ b/markdown_blocks/services_sparql.md
@@ -5,3 +5,6 @@ SPARQL query interface for eNanoMapper data and ontologies
 
 * Documentation
   <http://enanomapper.net/deliverables/d3/20160420_eNanoMapper_D3.2_Data_Management_System_with_extended_search_capabilities_FINAL.pdf>
+
+* Docker image
+  <https://hub.docker.com/r/insilicotox/ist-enm-virtuoso/>
\ No newline at end of file
diff --git a/nmsa-ist-integration.pdf b/nmsa-ist-integration.pdf
new file mode 100644
index 0000000..f6b77a4
--- /dev/null
+++ b/nmsa-ist-integration.pdf
diff --git a/nmsa-ist-integration.tex b/nmsa-ist-integration.tex
index c472e36..2f473ff 100644
--- a/nmsa-ist-integration.tex
+++ b/nmsa-ist-integration.tex
@@ -1,31 +1,40 @@
 \documentclass[final]{beamer}
 \usetheme{IST}
-\usepackage[orientation=portrait,size=a0,scale=1.4,debug]{beamerposter}  % poster size
+\usepackage[orientation=portrait,size=a0,scale=1.3,debug]{beamerposter}  % poster size
 \usepackage[absolute,overlay]{textpos}
 \usepackage[utf8]{inputenc}
 
 \setlength{\TPHorizModule}{1cm}
 \setlength{\TPVertModule}{1cm}
 
-\title{Integration of the in silico toxicology services in the eNanoMapper infrastructure }
+\title{Integration of in silico toxicology services in the \\ eNanoMapper infrastructure }
 \author{C. Helma, D. Gebele, M. Rautenberg}
 \institute{\emph{in silico} toxicology gmbh, Basel, Switzerland}
-\footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch}}
+\footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch} \\ \emph{in silico} toxicology gmbh - Rastatterstrasse 41 - CH-4057 Basel, Switzerland }
 
 \begin{document}
 
   \begin{frame}{}
 
-    \begin{textblock}{40.5}(1,11)
+    \begin{textblock}{40.5}(1,10)
       \begin{block}{Abstract}
         \input{./markdown_blocks/integration_summary}
       \end{block}
 
+      \begin{exampleblock}{Links}
+        \input{./markdown_blocks/integration_links}
+      \end{exampleblock}
+
+
+      \begin{block}{References}
+        \small\bibliography{references}
+      \end{block}
+
     \end{textblock}
 
-    \begin{textblock}{40.5}(42.6,11)
+    \begin{textblock}{40.5}(42.6,10)
 
-      \begin{block}{Text}
+      \begin{block}{Integration details}
         \input{./markdown_blocks/integration_text}
       \end{block}
 
@@ -33,23 +42,17 @@
 
 
 
-    \begin{textblock}{82.1}(1,28)
+    \begin{textblock}{82.1}(1,50)
       \input{./markdown_blocks/integration_diagram}
     \end{textblock}
 
-    \begin{textblock}{40.5}(1,90)
+    \begin{textblock}{40.5}(1,82)
 
-      \begin{exampleblock}{Links}
-        \input{./markdown_blocks/integration_links}
-      \end{exampleblock}
 
     \end{textblock}
 
-    \begin{textblock}{40.5}(42.6,90)
+    \begin{textblock}{40.5}(42.6,82)
 
-      \begin{block}{References}
-        \small\bibliography{references}
-      \end{block}
 
     \end{textblock}
 
diff --git a/nmsa-ist-rest.pdf b/nmsa-ist-rest.pdf
index e224de2..a2ee10a 100644
--- a/nmsa-ist-rest.pdf
+++ b/nmsa-ist-rest.pdf
diff --git a/nmsa-ist-services.pdf b/nmsa-ist-services.pdf
index 38305a2..5803260 100644
--- a/nmsa-ist-services.pdf
+++ b/nmsa-ist-services.pdf
diff --git a/nmsa-ist-services.tex b/nmsa-ist-services.tex
index de52529..9ab14ef 100644
--- a/nmsa-ist-services.tex
+++ b/nmsa-ist-services.tex
@@ -37,7 +37,7 @@
         \input{./markdown_blocks/services_lazar-rest}
       \end{block}
 
-      \begin{block}{SPARQL endpoint to eNM ontology and data}
+      \begin{block}{SPARQL endpoint for eNM ontology and data}
         \input{./markdown_blocks/services_sparql}
       \end{block}
 
@@ -49,11 +49,11 @@
         \input{./markdown_blocks/services_ontoviewer}
       \end{block}
 
-      \begin{block}{QSAR-reporting}
+      \begin{block}{\tt{qsar-report}}
         \input{./markdown_blocks/services_qsar-report}
       \end{block}
 
-      \begin{block}{Authorization \& Authentication}
+      \begin{block}{Authorization \& authentication}
         \input{./markdown_blocks/services_aa}
       \end{block}