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ENV["LAZAR_ENV"] = "production"
require_relative "#{ENV["HOME"]}/lazar/lib/lazar" unless $LOADED_FEATURES.include?("#{ENV["HOME"]}/lazar/lib/lazar.rb")
#require 'lazar'
require 'json'
include OpenTox
models = Model::Validation.all
size = models.size
puts "#{size} reports to store."
# store in users home dir subfolder
path = "#{ENV['HOME']}/lazar-validation-reports"
FileUtils.mkdir_p path
models.each_with_index do |model, idx|
@json = {}
# define file name
type = model.regression? ? "regression" : "classification"
date = model.created_at.to_s.split.first
dataset_name = model.training_dataset.source.split("/").last
name = (model.endpoint + "_" + model.species + "_" + dataset_name).gsub!(/[^0-9A-Za-z.\-]/, '_').gsub!(/\.csv$/,"")
branch = model.model.version["branch"].gsub(/\//,"-")
commit = model.model.version["commit"]
filename = [date,type,branch,commit,name].join("_")
# collect object data
@json["endpoint"] = model.endpoint
@json["species"] = model.species
@json["source"] = model.source
@json["training_dataset"] = dataset_name
@json["training_compounds"] = model.training_dataset.data_entries.size
@json["algorithms"] = model.algorithms
@json["name"] = model.model.name
@json["created_at"] = model.created_at
@json["unit"] = model.unit
@json["version"] = model.model.version
@json["crossvalidations"] = {}
model.crossvalidations.each_with_index do |cv,idx|
@json["crossvalidations"][idx.to_s] = {"folds": cv.folds, "instances": cv.nr_instances, "unpredicted": cv.nr_unpredicted, "statistics": cv.statistics}
end
# write report to file
File.open("#{path}/#{filename}.json", "w") do |f|
f.write(JSON.pretty_generate(JSON.parse(@json.to_json)))
end
puts "#{size - (idx+1)} left to store."
end
# store database dump in users home dir subfolder
if !CENTRAL_MONGO_IP.blank?
#TODO Can not dump because mongo commands missing in linked container !
#`mongodump -h #{CENTRAL_MONGO_IP} -o #{path}/#{Time.now.to_s.split.first}-dump-#{ENV["LAZAR_ENV"]} -d #{ENV["LAZAR_ENV"]}`
else
puts "Storing database dump."
`mongodump -h 127.0.0.1 -o #{path}/#{Time.now.to_s.split.first}-dump-#{ENV["LAZAR_ENV"]} -d #{ENV["LAZAR_ENV"]}`
end
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