api separated into individual components, adapted for new webservice versions

1 files changed, 35 insertions, 0 deletions

diff --git a/lib/algorithm.rb b/lib/algorithm.rb
new file mode 100644
index 0000000..912e14d
--- /dev/null
+++ b/lib/algorithm.rb
@@ -0,0 +1,35 @@
+module OpenTox
+	module Algorithm 
+
+		class Fminer < OpenTox
+			# Create a new dataset with BBRC features
+			def initialize(training_dataset)
+				@uri = RestClient.post @@config[:services]["opentox-fminer"], :dataset_uri => training_dataset.uri
+			end
+		end
+
+		class Similarity < OpenTox
+
+			def initialize
+				@uri = @@config[:services]["opentox-similarity"]
+			end
+
+			def self.tanimoto(dataset,compounds)
+				RestClient.post @uri + 'tanimoto', :dataset_uri => dataset.uri, :compound_uris => compounds.collect{ |c| c.uri }
+			end
+
+			def self.weighted_tanimoto(dataset,compounds)
+				RestClient.post @uri + 'weighted_tanimoto', :dataset_uri => dataset.uri, :compound_uris => compounds.collect{ |c| c.uri }
+			end
+
+		end
+
+		class Lazar < OpenTox
+			# Create a new prediction model from a dataset
+			def initialize(params)
+				@uri = RestClient.post @@config[:services]["opentox-lazar"] + 'models' , :dataset_uri => params[:dataset_uri]
+			end
+		end
+
+	end
+end