blob: 912e14d0abb2b96aa811eda1c43162e5f5122af3 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
module OpenTox
module Algorithm
class Fminer < OpenTox
# Create a new dataset with BBRC features
def initialize(training_dataset)
@uri = RestClient.post @@config[:services]["opentox-fminer"], :dataset_uri => training_dataset.uri
end
end
class Similarity < OpenTox
def initialize
@uri = @@config[:services]["opentox-similarity"]
end
def self.tanimoto(dataset,compounds)
RestClient.post @uri + 'tanimoto', :dataset_uri => dataset.uri, :compound_uris => compounds.collect{ |c| c.uri }
end
def self.weighted_tanimoto(dataset,compounds)
RestClient.post @uri + 'weighted_tanimoto', :dataset_uri => dataset.uri, :compound_uris => compounds.collect{ |c| c.uri }
end
end
class Lazar < OpenTox
# Create a new prediction model from a dataset
def initialize(params)
@uri = RestClient.post @@config[:services]["opentox-lazar"] + 'models' , :dataset_uri => params[:dataset_uri]
end
end
end
end
|
