diff options
| author | ch <ch@ch-test2> | 2015-08-18 16:37:09 +0200 |
|---|---|---|
| committer | ch <ch@ch-test2> | 2015-08-18 16:37:09 +0200 |
| commit | 4067d78c78c1f503b5f21d043ece8042260a3d78 (patch) | |
| tree | 1bf9e2ead59676009a91058d8cd6c301f27549c8 /lib/lazar.rb | |
| parent | 4f622dd05299c3812286e11e8fce3e656e21ef29 (diff) | |
initial installation fixes, installs on Debian 3.16.7
Diffstat (limited to 'lib/lazar.rb')
| -rw-r--r-- | lib/lazar.rb | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/lib/lazar.rb b/lib/lazar.rb index 0c5e18b..9e2363c 100644 --- a/lib/lazar.rb +++ b/lib/lazar.rb @@ -14,7 +14,7 @@ require "base64" # TODO retrieve correct environment from Rack/Sinatra ENV["MONGOID_ENV"] ||= "development" # TODO remove config files, change default via ENV or directly in Mongoid class -Mongoid.load!("#{ENV['HOME']}/.opentox/config/mongoid.yml") +Mongoid.load!("#{File.expand_path(File.join(File.dirname(__FILE__),'..','mongoid.yml'))}") # TODO get Mongo::Client from Mongoid $mongo = Mongo::Client.new('mongodb://127.0.0.1:27017/opentox') # TODO same for GridFS @@ -31,10 +31,13 @@ Mongo::Logger.level = Logger::WARN #Mongoid.logger = $logger # Require sub-Repositories +# TODO: set +ENV["LD_LIBRARY_PATH"] = "#{File.join File.dirname(__FILE__),'..','openbabel','lib'}" +p ENV["LD_LIBRARY_PATH"] require_relative '../libfminer/libbbrc/bbrc' # include before openbabel require_relative '../libfminer/liblast/last' # require_relative '../last-utils/lu.rb' -require 'openbabel' +require_relative '../openbabel/lib/openbabel' # Fminer environment variables ENV['FMINER_SMARTS'] = 'true' |