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| author | Christoph Helma <helma@in-silico.ch> | 2012-03-07 13:51:45 +0100 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2012-03-07 13:51:45 +0100 |
| commit | 2e3db6f6532ded28dfada22d4445038b79271814 (patch) | |
| tree | 89361d4f66daf70767d4bf45a185e2f237a4aafc /lib/opentox.rb | |
| parent | 7588adffdbd48a73d8b22be2379a5afee79e5bea (diff) | |
actor for error reports, turtle output for error reports
Diffstat (limited to 'lib/opentox.rb')
| -rw-r--r-- | lib/opentox.rb | 9 |
1 files changed, 7 insertions, 2 deletions
diff --git a/lib/opentox.rb b/lib/opentox.rb index 10c7895..566c458 100644 --- a/lib/opentox.rb +++ b/lib/opentox.rb @@ -2,10 +2,15 @@ RDF::OT = RDF::Vocabulary.new 'http://www.opentox.org/api/1.2#' RDF::OT1 = RDF::Vocabulary.new 'http://www.opentox.org/api/1.1#' RDF::OTA = RDF::Vocabulary.new 'http://www.opentox.org/algorithmTypes.owl#' + SERVICES = ["Compound", "Feature", "Dataset", "Algorithm", "Model", "Validation", "Task", "Investigation"] -# defaults to stderr, may be changed to file output -$logger = OTLogger.new(STDERR) # no rotation +# Regular expressions for parsing classification data +TRUE_REGEXP = /^(true|active|1|1.0|tox|activating|carcinogen|mutagenic)$/i +FALSE_REGEXP = /^(false|inactive|0|0.0|low tox|deactivating|non-carcinogen|non-mutagenic)$/i + +# defaults to stderr, may be changed to file output (e.g in opentox-service) +$logger = OTLogger.new(STDERR) $logger.level = Logger::DEBUG module OpenTox |