diff options
author | Christoph Helma <helma@in-silico.ch> | 2016-05-09 15:51:50 +0200 |
---|---|---|
committer | Christoph Helma <helma@in-silico.ch> | 2016-05-09 15:51:50 +0200 |
commit | a18218bd1586edd8097729d242abb8947d6988df (patch) | |
tree | e94ac3bffb25751ed7e11a626ddde8b96f1de816 /test/fminer-long.rb | |
parent | e2e7045c3efeb59dd650b78772009281e7fa56a0 (diff) | |
parent | 0b416e3b55a9256915a2427afe5bc112bcabc203 (diff) |
development branch mergedv0.9.3
Diffstat (limited to 'test/fminer-long.rb')
-rw-r--r-- | test/fminer-long.rb | 38 |
1 files changed, 0 insertions, 38 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb deleted file mode 100644 index 0f202b4..0000000 --- a/test/fminer-long.rb +++ /dev/null @@ -1,38 +0,0 @@ -require_relative "setup.rb" - -class FminerTest < MiniTest::Test - - def test_fminer_multicell - #skip "multicell segfaults" - # TODO aborts, probably fminer - # or OpenBabel segfault - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"multi_cell_call.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) - p feature_dataset.training_parameters - assert_equal dataset.compound_ids, feature_dataset.compound_ids - dataset.delete - feature_dataset.delete - end - - def test_fminer_isscan - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) - assert_equal feature_dataset.compounds.size, dataset.compounds.size - p feature_dataset.features.size - p feature_dataset.training_parameters - dataset.delete - feature_dataset.delete - end - - def test_fminer_kazius - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") - # TODO reactivate default settings - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20) - assert_equal feature_dataset.compounds.size, dataset.compounds.size - feature_dataset = Dataset.find feature_dataset.id - assert feature_dataset.data_entries.size, dataset.compounds.size - dataset.delete - feature_dataset.delete - end - -end |