diff options
Diffstat (limited to 'lib/algorithm.rb')
| -rw-r--r-- | lib/algorithm.rb | 16 |
1 files changed, 6 insertions, 10 deletions
diff --git a/lib/algorithm.rb b/lib/algorithm.rb index 912e14d..33731af 100644 --- a/lib/algorithm.rb +++ b/lib/algorithm.rb @@ -3,23 +3,19 @@ module OpenTox class Fminer < OpenTox # Create a new dataset with BBRC features - def initialize(training_dataset) - @uri = RestClient.post @@config[:services]["opentox-fminer"], :dataset_uri => training_dataset.uri + def self.create(training_dataset_uri) + RestClient.post @@config[:services]["opentox-fminer"], :dataset_uri => training_dataset_uri end end class Similarity < OpenTox - def initialize - @uri = @@config[:services]["opentox-similarity"] + def self.tanimoto(dataset1,compound1,dataset2,compound2) + RestClient.get File.join(@@config[:services]["opentox-dataset"], 'algorithm/tanimoto/dataset',dataset1.name,compound1.inchi,'dataset',dataset2.name,compound2.inchi) end - def self.tanimoto(dataset,compounds) - RestClient.post @uri + 'tanimoto', :dataset_uri => dataset.uri, :compound_uris => compounds.collect{ |c| c.uri } - end - - def self.weighted_tanimoto(dataset,compounds) - RestClient.post @uri + 'weighted_tanimoto', :dataset_uri => dataset.uri, :compound_uris => compounds.collect{ |c| c.uri } + def self.weighted_tanimoto(dataset1,compound1,dataset2,compound2) + RestClient.get URI.encode(File.join(@@config[:services]["opentox-dataset"], 'algorithm/weighted_tanimoto/dataset',dataset1.name,'compound',compound1.inchi,'dataset',dataset2.name,'compound',compound2.inchi)) end end |